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RFX3 regulatory factor X3 [ Pan troglodytes (chimpanzee) ]

Gene ID: 464971, updated on 17-Oct-2018

Summary

Official Symbol
RFX3provided by VGNC
Official Full Name
regulatory factor X3provided by VGNC
Primary source
VGNC:VGNC:57734
Locus tag
CK820_G0023718
See related
Ensembl:ENSPTRG00000048670
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs

Genomic context

See RFX3 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
26
Annotation release Status Assembly Chr Location
105 current Clint_PTRv2 (GCF_002880755.1) 9 NC_036888.1 (3161074..3469371, complement)
103 previous assembly Pan_troglodytes-2.1.4 (GCF_000001515.6) 9 NC_006476.3 (3235906..3501791, complement)

Chromosome 9 - NC_036888.1Genomic Context describing neighboring genes Neighboring gene histone-arginine methyltransferase CARM1-like Neighboring gene uncharacterized LOC107976600 Neighboring gene uncharacterized LOC107976599 Neighboring gene uncharacterized LOC104007809 Neighboring gene uncharacterized LOC100610843 Neighboring gene uncharacterized LOC100614007 Neighboring gene GLIS family zinc finger 3

Genomic regions, transcripts, and products

Expression

  • Project title: Tissue-specific RNA-sequencing for ten non-human primate species
  • Description: Total RNA sequencing of fifteen different tissues for ten non-human primates
  • BioProject: PRJNA271912
  • Publication: PMID 25392405
  • Analysis date: Tue Apr 3 07:13:10 2018

General gene information

Markers

Homology

General protein information

Preferred Names
transcription factor RFX3
Names
regulatory factor X, 3 (influences HLA class II expression)

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001280147.1NP_001267076.1  transcription factor RFX3

    See identical proteins and their annotated locations for NP_001267076.1

    Status: PROVISIONAL

    Source sequence(s)
    AK306287
    UniProtKB/TrEMBL
    G2HHS3
    Related
    ENSPTRP00000062439.1, ENSPTRT00000091479.1
    Conserved Domains (2) summary
    pfam02257
    Location:184256
    RFX_DNA_binding; RFX DNA-binding domain
    pfam04589
    Location:51137
    RFX1_trans_act; RFX1 transcription activation region

RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Clint_PTRv2 Primary Assembly

Genomic

  1. NC_036888.1 Reference Clint_PTRv2 Primary Assembly

    Range
    3161074..3469371 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016960361.2XP_016815850.1  transcription factor RFX3 isoform X5

  2. XM_016960353.2XP_016815842.1  transcription factor RFX3 isoform X2

    Conserved Domains (2) summary
    pfam02257
    Location:190262
    RFX_DNA_binding; RFX DNA-binding domain
    pfam04589
    Location:57143
    RFX1_trans_act; RFX1 transcription activation region
  3. XM_016960367.2XP_016815856.1  transcription factor RFX3 isoform X5

  4. XM_016960357.2XP_016815846.1  transcription factor RFX3 isoform X5

  5. XM_016960365.2XP_016815854.1  transcription factor RFX3 isoform X5

  6. XM_016960364.2XP_016815853.1  transcription factor RFX3 isoform X5

  7. XM_016960363.2XP_016815852.1  transcription factor RFX3 isoform X5

  8. XM_016960371.2XP_016815860.1  transcription factor RFX3 isoform X7

  9. XM_016960352.2XP_016815841.1  transcription factor RFX3 isoform X1

  10. XM_016960358.2XP_016815847.1  transcription factor RFX3 isoform X5

  11. XM_016960369.2XP_016815858.1  transcription factor RFX3 isoform X6

    Conserved Domains (2) summary
    pfam02257
    Location:184256
    RFX_DNA_binding; RFX DNA-binding domain
    pfam04589
    Location:51133
    RFX1_trans_act; RFX1 transcription activation region
  12. XM_016960370.2XP_016815859.1  transcription factor RFX3 isoform X6

    Conserved Domains (2) summary
    pfam02257
    Location:184256
    RFX_DNA_binding; RFX DNA-binding domain
    pfam04589
    Location:51133
    RFX1_trans_act; RFX1 transcription activation region
  13. XM_016960372.2XP_016815861.1  transcription factor RFX3 isoform X8

  14. XM_016960360.2XP_016815849.1  transcription factor RFX3 isoform X5

  15. XM_016960359.2XP_016815848.1  transcription factor RFX3 isoform X5

  16. XM_024345518.1XP_024201286.1  transcription factor RFX3 isoform X2

    Conserved Domains (2) summary
    pfam02257
    Location:190262
    RFX_DNA_binding; RFX DNA-binding domain
    pfam04589
    Location:57143
    RFX1_trans_act; RFX1 transcription activation region
  17. XM_016960362.2XP_016815851.1  transcription factor RFX3 isoform X5

  18. XM_016960368.2XP_016815857.1  transcription factor RFX3 isoform X5

  19. XM_016960354.2XP_016815843.1  transcription factor RFX3 isoform X3

  20. XM_016960356.2XP_016815845.1  transcription factor RFX3 isoform X4

    Related
    ENSPTRP00000068061.1
  21. XM_016960373.2XP_016815862.1  transcription factor RFX3 isoform X9

    Related
    ENSPTRP00000071120.1
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