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RALGPS1 Ral GEF with PH domain and SH3 binding motif 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 464745, updated on 3-Nov-2018

Summary

Official Symbol
RALGPS1provided by VGNC
Official Full Name
Ral GEF with PH domain and SH3 binding motif 1provided by VGNC
Primary source
VGNC:VGNC:14393
Locus tag
CK820_G0012314
See related
Ensembl:ENSPTRG00000021382
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs

Genomic context

See RALGPS1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
23
Annotation release Status Assembly Chr Location
105 current Clint_PTRv2 (GCF_002880755.1) 9 NC_036888.1 (99183268..99492897)
103 previous assembly Pan_troglodytes-2.1.4 (GCF_000001515.6) 9 NC_006476.3 (126059857..126354721)

Chromosome 9 - NC_036888.1Genomic Context describing neighboring genes Neighboring gene zinc finger and BTB domain containing 43 Neighboring gene zinc finger and BTB domain containing 34 Neighboring gene angiopoietin like 2 Neighboring gene GTPase activating Rap/RanGAP domain like 3 Neighboring gene density-regulated protein-like Neighboring gene solute carrier family 2 member 8

Genomic regions, transcripts, and products

Expression

  • Project title: Tissue-specific RNA-sequencing for ten non-human primate species
  • Description: Total RNA sequencing of fifteen different tissues for ten non-human primates
  • BioProject: PRJNA271912
  • Publication: PMID 25392405
  • Analysis date: Tue Apr 3 07:13:10 2018

General gene information

Markers

Homology

General protein information

Preferred Names
ras-specific guanine nucleotide-releasing factor RalGPS1

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Clint_PTRv2 Primary Assembly

Genomic

  1. NC_036888.1 Reference Clint_PTRv2 Primary Assembly

    Range
    99183268..99492897
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016961695.2XP_016817184.1  ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X11

    Conserved Domains (2) summary
    smart00147
    Location:46288
    RasGEF; Guanine nucleotide exchange factor for Ras-like small GTPases
    cd13310
    Location:433548
    PH_RalGPS1_2; Ral GEF with PH domain and SH3 binding motif 1 and 2 Pleckstrin homology (PH) domain
  2. XM_016961699.2XP_016817188.1  ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X12

    Conserved Domains (2) summary
    smart00147
    Location:46288
    RasGEF; Guanine nucleotide exchange factor for Ras-like small GTPases
    cd13310
    Location:391506
    PH_RalGPS1_2; Ral GEF with PH domain and SH3 binding motif 1 and 2 Pleckstrin homology (PH) domain
  3. XM_024345893.1XP_024201661.1  ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X8

    Conserved Domains (2) summary
    smart00147
    Location:46288
    RasGEF; Guanine nucleotide exchange factor for Ras-like small GTPases
    cd13310
    Location:460575
    PH_RalGPS1_2; Ral GEF with PH domain and SH3 binding motif 1 and 2 Pleckstrin homology (PH) domain
  4. XM_016961700.2XP_016817189.1  ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X14

    Conserved Domains (3) summary
    smart00147
    Location:46288
    RasGEF; Guanine nucleotide exchange factor for Ras-like small GTPases
    cd13310
    Location:390505
    PH_RalGPS1_2; Ral GEF with PH domain and SH3 binding motif 1 and 2 Pleckstrin homology (PH) domain
    pfam00169
    Location:389500
    PH; PH domain
  5. XM_016961689.2XP_016817178.1  ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X5

  6. XM_016961694.2XP_016817183.1  ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X2

    Conserved Domains (2) summary
    smart00147
    Location:46288
    RasGEF; Guanine nucleotide exchange factor for Ras-like small GTPases
    cl17171
    Location:461510
    PH-like; Pleckstrin homology-like domain
  7. XM_016961698.2XP_016817187.1  ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X12

    Conserved Domains (2) summary
    smart00147
    Location:46288
    RasGEF; Guanine nucleotide exchange factor for Ras-like small GTPases
    cd13310
    Location:391506
    PH_RalGPS1_2; Ral GEF with PH domain and SH3 binding motif 1 and 2 Pleckstrin homology (PH) domain
  8. XM_016961701.2XP_016817190.1  ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X15

  9. XM_024345889.1XP_024201657.1  ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X4

    Conserved Domains (2) summary
    smart00147
    Location:46288
    RasGEF; Guanine nucleotide exchange factor for Ras-like small GTPases
    cl17171
    Location:460509
    PH-like; Pleckstrin homology-like domain
  10. XM_016961677.2XP_016817166.2  ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X2

    Conserved Domains (2) summary
    smart00147
    Location:46288
    RasGEF; Guanine nucleotide exchange factor for Ras-like small GTPases
    cl17171
    Location:461510
    PH-like; Pleckstrin homology-like domain
  11. XM_024345887.1XP_024201655.1  ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X1

    Conserved Domains (2) summary
    smart00147
    Location:46342
    RasGEF; Guanine nucleotide exchange factor for Ras-like small GTPases
    cd13310
    Location:515630
    PH_RalGPS1_2; Ral GEF with PH domain and SH3 binding motif 1 and 2 Pleckstrin homology (PH) domain
  12. XM_009457309.3XP_009455584.2  ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X9

  13. XM_024345888.1XP_024201656.1  ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X3

    Conserved Domains (2) summary
    smart00147
    Location:46342
    RasGEF; Guanine nucleotide exchange factor for Ras-like small GTPases
    cd13310
    Location:515630
    PH_RalGPS1_2; Ral GEF with PH domain and SH3 binding motif 1 and 2 Pleckstrin homology (PH) domain
  14. XM_024345890.1XP_024201658.1  ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X6

    Conserved Domains (2) summary
    smart00147
    Location:46342
    RasGEF; Guanine nucleotide exchange factor for Ras-like small GTPases
    cd13310
    Location:445560
    PH_RalGPS1_2; Ral GEF with PH domain and SH3 binding motif 1 and 2 Pleckstrin homology (PH) domain
  15. XM_016961697.2XP_016817186.1  ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X15

  16. XM_024345894.1XP_024201662.1  ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X16

    Conserved Domains (1) summary
    smart00147
    Location:46342
    RasGEF; Guanine nucleotide exchange factor for Ras-like small GTPases
  17. XM_024345892.1XP_024201660.1  ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X10

    Conserved Domains (2) summary
    smart00147
    Location:46342
    RasGEF; Guanine nucleotide exchange factor for Ras-like small GTPases
    cd13310
    Location:445560
    PH_RalGPS1_2; Ral GEF with PH domain and SH3 binding motif 1 and 2 Pleckstrin homology (PH) domain
  18. XM_016961685.2XP_016817174.1  ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X7

    Conserved Domains (2) summary
    smart00147
    Location:46288
    RasGEF; Guanine nucleotide exchange factor for Ras-like small GTPases
    cd13310
    Location:461576
    PH_RalGPS1_2; Ral GEF with PH domain and SH3 binding motif 1 and 2 Pleckstrin homology (PH) domain
  19. XM_024345891.1XP_024201659.1  ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X8

    Conserved Domains (2) summary
    smart00147
    Location:46288
    RasGEF; Guanine nucleotide exchange factor for Ras-like small GTPases
    cd13310
    Location:460575
    PH_RalGPS1_2; Ral GEF with PH domain and SH3 binding motif 1 and 2 Pleckstrin homology (PH) domain
  20. XM_016961691.2XP_016817180.1  ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X11

    Related
    ENSPTRP00000071767.1
    Conserved Domains (2) summary
    smart00147
    Location:46288
    RasGEF; Guanine nucleotide exchange factor for Ras-like small GTPases
    cd13310
    Location:433548
    PH_RalGPS1_2; Ral GEF with PH domain and SH3 binding motif 1 and 2 Pleckstrin homology (PH) domain
  21. XM_016961682.2XP_016817171.1  ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X5

  22. XM_520267.7XP_520267.2  ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X12

    Related
    ENSPTRP00000036542.5
    Conserved Domains (2) summary
    smart00147
    Location:46288
    RasGEF; Guanine nucleotide exchange factor for Ras-like small GTPases
    cd13310
    Location:391506
    PH_RalGPS1_2; Ral GEF with PH domain and SH3 binding motif 1 and 2 Pleckstrin homology (PH) domain
  23. XM_003951528.4XP_003951577.1  ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X13

    See identical proteins and their annotated locations for XP_003951577.1

    Conserved Domains (2) summary
    smart00147
    Location:46288
    RasGEF; Guanine nucleotide exchange factor for Ras-like small GTPases
    cd13310
    Location:391506
    PH_RalGPS1_2; Ral GEF with PH domain and SH3 binding motif 1 and 2 Pleckstrin homology (PH) domain
  24. XM_016961696.2XP_016817185.1  ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X14

    Conserved Domains (3) summary
    smart00147
    Location:46288
    RasGEF; Guanine nucleotide exchange factor for Ras-like small GTPases
    cd13310
    Location:390505
    PH_RalGPS1_2; Ral GEF with PH domain and SH3 binding motif 1 and 2 Pleckstrin homology (PH) domain
    pfam00169
    Location:389500
    PH; PH domain
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