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ABCA1 ATP binding cassette subfamily A member 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 464630, updated on 2-Nov-2023

Summary

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Official Symbol
ABCA1provided by VGNC
Official Full Name
ATP binding cassette subfamily A member 1provided by VGNC
Primary source
VGNC:VGNC:4595
Locus tag
CK820_G0027265
See related
Ensembl:ENSPTRG00000021219
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See ABCA1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
53
Annotation release Status Assembly Chr Location
RS_2023_04 current NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 9 NC_072407.1 (85213918..85361318, complement)

Chromosome 9 - NC_072407.1Genomic Context describing neighboring genes Neighboring gene nipsnap homolog 3A Neighboring gene nipsnap homolog 3B Neighboring gene uncharacterized LOC107976747 Neighboring gene uncharacterized LOC129135974 Neighboring gene solute carrier family 44 member 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_072407.1 Chromosome 9 Reference NHGRI_mPanTro3-v1.1-hic.freeze_pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables lipid transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-binding cassette sub-family A member 1; phospholipid-transporting ATPase ABCA1
Names
ATP-binding cassette, sub-family A (ABC1), member 1
ATP-binding cassette, sub-family A member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v1.1-hic.freeze_pri

Genomic

  1. NC_072407.1 Reference NHGRI_mPanTro3-v1.1-hic.freeze_pri

    Range
    85213918..85361318 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016961360.3 → XP_016816849.1  phospholipid-transporting ATPase ABCA1 isoform X3

    UniProtKB/TrEMBL
    A0A2I3RDI4

  2. XM_016961357.3 → XP_016816846.1  phospholipid-transporting ATPase ABCA1 isoform X1

    UniProtKB/TrEMBL
    A0A2I3RDI4
    Related
    ENSPTRP00000062700.1

  3. XM_001138040.5 → XP_001138040.1  phospholipid-transporting ATPase ABCA1 isoform X2

    See identical proteins and their annotated locations for XP_001138040.1

    UniProtKB/TrEMBL
    A0A2J8LPN0, A0A6D2X5A8, H2R6H1, K7CGI9
    Related
    ENSPTRP00000049117.2
    Conserved Domains (1) summary
    cl28181
    Location:6 → 2236
    AAA; ATPases associated with a variety of cellular activities

  4. XM_016961358.3 → XP_016816847.1  phospholipid-transporting ATPase ABCA1 isoform X1

    UniProtKB/TrEMBL
    A0A2I3RDI4

  5. XM_016961359.3 → XP_016816848.1  phospholipid-transporting ATPase ABCA1 isoform X1

    UniProtKB/TrEMBL
    A0A2I3RDI4

  6. XM_024345802.2 → XP_024201570.1  phospholipid-transporting ATPase ABCA1 isoform X4

    UniProtKB/TrEMBL
    A0A2I3RDI4
    Conserved Domains (1) summary
    cl28181
    Location:6 → 2070
    AAA; ATPases associated with a variety of cellular activities
Nucleotide Protein
Heading Accession and Version