GLI3 GLI family zinc finger 3 [Pan troglodytes (chimpanzee)] - Gene

Summary

Official Symbol: GLI3provided by VGNC
Official Full Name: GLI family zinc finger 3provided by VGNC
Primary source: VGNC:VGNC:4376
Locus tag: CK820_G0040402
See related: Ensembl:ENSPTRG00000019117
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Pan troglodytes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as: GLI3FL; GLI3-190
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 7

Exon count:: 16

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2)	6	NC_072404.2 (47151497..47427054)
RS_2023_04	previous assembly	NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1)	7	NC_072405.1 (44792734..45068026)

Chromosome 6 - NC_072404.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Markers

RH123527 (e-PCR)
- UniSTS:135945

GDB:435308 (e-PCR)
- UniSTS:157225

SHGC-106357 (e-PCR)
- UniSTS:169770

Gli3 (e-PCR), detects polymorphism
- UniSTS:143219

GLI3_V241 (e-PCR)
- UniSTS:280699

GLI3_973.2 (e-PCR)
- UniSTS:280699

GLI3 (e-PCR)
- UniSTS:39311

D7S691 (e-PCR), detects polymorphism
- UniSTS:51099

D7S691 (e-PCR), detects polymorphism
- UniSTS:54698

D7S2746 (e-PCR)
- UniSTS:44209

GDB:1317516 (e-PCR)
- UniSTS:21187

GDB:1317704 (e-PCR)
- UniSTS:56011

GDB:1318579 (e-PCR)
- UniSTS:56033

SHGC-152225 (e-PCR)
- UniSTS:182246

RH65647 (e-PCR)
- UniSTS:77802

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IEA Inferred from Electronic Annotation more info	PubMed
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info	PubMed
involved_in smoothened signaling pathway	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: transcriptional activator GLI3

Names: GLI-Kruppel family member 3; GLI-Kruppel family member GLI3 (Greig cephalopolysyndactyly syndrome); GLI3 form of 190 kDa; GLI3 full length protein; zinc finger protein GLI3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001034190.1 → NP_001029362.1 transcriptional activator GLI3

See identical proteins and their annotated locations for NP_001029362.1

Status: PROVISIONAL

Source sequence(s)

AY665272

UniProtKB/Swiss-Prot

Q5IS56

UniProtKB/TrEMBL

K7C5V6

Conserved Domains (2) summary

sd00017
Location:548 → 570

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam13465
Location:562 → 589

zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

NC_072404.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Range

47151497..47427054

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_009452941.5 → XP_009451216.1 transcriptional activator GLI3 isoform X1

See identical proteins and their annotated locations for XP_009451216.1

UniProtKB/TrEMBL

A0A2J8K9K4, A0A6D2WTC0, H2QUH1

Related

ENSPTRP00000032656.3

Conserved Domains (2) summary

COG5189
Location:542 → 632

SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

sd00017
Location:548 → 570

ZF_C2H2; C2H2 Zn finger [structural motif]
XM_063813784.1 → XP_063669854.1 transcriptional activator GLI3 isoform X2