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AHR aryl hydrocarbon receptor [ Pan troglodytes (chimpanzee) ]

Gene ID: 463278, updated on 2-Nov-2023

Summary

Official Symbol
AHRprovided by VGNC
Official Full Name
aryl hydrocarbon receptorprovided by VGNC
Primary source
VGNC:VGNC:4253
Locus tag
CK820_G0021331
See related
Ensembl:ENSPTRG00000018955
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
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Genomic context

See AHR in Genome Data Viewer
Location:
chromosome: 7
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_04 current NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 7 NC_072405.1 (20867663..20930164)

Chromosome 7 - NC_072405.1Genomic Context describing neighboring genes Neighboring gene U6 snRNA-associated Sm-like protein LSm5 Neighboring gene uncharacterized LOC129144524 Neighboring gene uncharacterized LOC104007120 Neighboring gene uncharacterized LOC100613581 Neighboring gene uncharacterized LOC104007121 Neighboring gene sorting nexin 13

Genomic regions, transcripts, and products

Genomic Sequence:
NC_072405.1 Chromosome 7 Reference NHGRI_mPanTro3-v1.1-hic.freeze_pri

Pathways from PubChem

General gene information

Markers

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
PubMed 
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
part_of aryl hydrocarbon receptor complex IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v1.1-hic.freeze_pri

Genomic

  1. NC_072405.1 Reference NHGRI_mPanTro3-v1.1-hic.freeze_pri

    Range
    20867663..20930164
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016957117.3XP_016812606.1  aryl hydrocarbon receptor isoform X1

    UniProtKB/TrEMBL
    A0A2J8MEL0
  2. XM_003318337.5XP_003318385.1  aryl hydrocarbon receptor isoform X2

    See identical proteins and their annotated locations for XP_003318385.1

    UniProtKB/TrEMBL
    A0A2J8MEL0, H2QU80
    Related
    ENSPTRP00000032381.5
    Conserved Domains (4) summary
    cd00083
    Location:3778
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    cd00130
    Location:122224
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam00989
    Location:113227
    PAS; PAS fold
    pfam08447
    Location:297382
    PAS_3; PAS fold
  3. XM_016957118.3XP_016812607.1  aryl hydrocarbon receptor isoform X3

    UniProtKB/TrEMBL
    A0A2J8MEL0