RXRB retinoid X receptor beta [Pan troglodytes (chimpanzee)] - Gene

Summary

Official Symbol: RXRBprovided by VGNC
Official Full Name: retinoid X receptor betaprovided by VGNC
Primary source: VGNC:VGNC:11225
Locus tag: CK820_G0006972
See related: Ensembl:ENSPTRG00000018034
Gene type: protein coding
RefSeq status: MODEL
Organism: Pan troglodytes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 6

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
RS_2023_04	current	NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1)	6	NC_072404.1 (39077515..39084393, complement)

Chromosome 6 - NC_072404.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_072404.1 Chromosome 6 Reference NHGRI_mPanTro3-v1.1-hic.freeze_pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

Pathways from PubChem

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General gene information

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Markers

MARC_26740-26741:1037207926:1 (e-PCR)
- UniSTS:269065

MARC_5891-5892:991939781:1 (e-PCR)
- UniSTS:231181

MARC_5891-5892:997299401:1 (e-PCR)
- UniSTS:231181

MARC_6301-6302:997299518:1 (e-PCR)
- UniSTS:269632

STS-X66424 (e-PCR)
- UniSTS:34427

Rxrb (e-PCR), detects polymorphism
- UniSTS:526981

RXRB_2036 (e-PCR)
- UniSTS:280976

G10518 (e-PCR)
- UniSTS:32168

RH69971 (e-PCR)
- UniSTS:46538

Homology

NCBI Orthologs

Orthologs from OrthoDB

General protein information

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Preferred Names: retinoic acid receptor RXR-beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v1.1-hic.freeze_pri

Genomic

NC_072404.1 Reference NHGRI_mPanTro3-v1.1-hic.freeze_pri

Range

39077515..39084393 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_001168893.7 → XP_001168893.1 retinoic acid receptor RXR-beta isoform X2

See identical proteins and their annotated locations for XP_001168893.1

UniProtKB/TrEMBL

A0A2J8NYI0, A0A803KLA8, K7BZF6

Conserved Domains (3) summary

cd06943
Location:298 → 511

NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily

cd06956
Location:204 → 279

NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers

pfam11825
Location:135 → 189

Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1
XM_009451003.4 → XP_009449278.1 retinoic acid receptor RXR-beta isoform X1

See identical proteins and their annotated locations for XP_009449278.1

UniProtKB/TrEMBL

A0A2J8NYH1, A0A6D2VVI6, H2QSS5

Related

ENSPTRP00000030802.2

Conserved Domains (2) summary

cd06943
Location:298 → 515

NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily

cd06956
Location:204 → 279

NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
XM_009451005.4 → XP_009449280.1 retinoic acid receptor RXR-beta isoform X3

UniProtKB/TrEMBL

A0A2I3RMM0

Conserved Domains (2) summary

cd06943
Location:202 → 415

NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily

cd06956
Location:108 → 183

NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers