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RXRB retinoid X receptor beta [ Pan troglodytes (chimpanzee) ]

Gene ID: 462601, updated on 6-Jun-2024

Summary

Official Symbol
RXRBprovided by VGNC
Official Full Name
retinoid X receptor betaprovided by VGNC
Primary source
VGNC:VGNC:11225
Locus tag
CK820_G0006972
See related
Ensembl:ENSPTRG00000018034
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
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Genomic context

See RXRB in Genome Data Viewer
Location:
chromosome: 6
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 5 NC_072403.2 (39077508..39084579, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 6 NC_072404.1 (39077515..39084393, complement)

Chromosome 5 - NC_072403.2Genomic Context describing neighboring genes Neighboring gene HLA class II histocompatibility antigen, DP beta 1 chain-like Neighboring gene uncharacterized LOC134810288 Neighboring gene collagen type XI alpha 2 chain Neighboring gene solute carrier family 39 member 7 Neighboring gene hydroxysteroid 17-beta dehydrogenase 8

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Markers

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
PubMed 
enables nuclear steroid receptor activity IEA
Inferred from Electronic Annotation
more info
PubMed 
enables retinoic acid-responsive element binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in response to retinoic acid IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in retinoic acid receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
retinoic acid receptor RXR-beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072403.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    39077508..39084579 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009451005.5XP_009449280.1  retinoic acid receptor RXR-beta isoform X4

    UniProtKB/TrEMBL
    A0A2I3RMM0
    Conserved Domains (2) summary
    cd06943
    Location:202415
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:108183
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
  2. XM_063812873.1XP_063668943.1  retinoic acid receptor RXR-beta isoform X3

    UniProtKB/TrEMBL
    A0A2I3RMM0
  3. XM_001168893.8XP_001168893.1  retinoic acid receptor RXR-beta isoform X2

    See identical proteins and their annotated locations for XP_001168893.1

    UniProtKB/TrEMBL
    A0A2J8NYI0, A0A803KLA8, K7BZF6
    Conserved Domains (3) summary
    cd06943
    Location:298511
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:204279
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:135189
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1
  4. XM_009451003.4XP_009449278.1  retinoic acid receptor RXR-beta isoform X1

    See identical proteins and their annotated locations for XP_009449278.1

    UniProtKB/TrEMBL
    A0A2J8NYH1, A0A6D2VVI6, H2QSS5
    Related
    ENSPTRP00000030802.2
    Conserved Domains (2) summary
    cd06943
    Location:298515
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:204279
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers