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EBF1 EBF transcription factor 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 462229, updated on 2-Nov-2023

Summary

Official Symbol
EBF1provided by VGNC
Official Full Name
EBF transcription factor 1provided by VGNC
Primary source
VGNC:VGNC:11935
Locus tag
CK820_G0010219
See related
Ensembl:ENSPTRG00000017477
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
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Genomic context

See EBF1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2023_04 current NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 5 NC_072403.1 (156410284..156812484, complement)

Chromosome 5 - NC_072403.1Genomic Context describing neighboring genes Neighboring gene cell division cycle 37, HSP90 cochaperone Neighboring gene uracil-DNA glycosylase-like Neighboring gene small nucleolar RNA SNORA68 Neighboring gene ring finger protein 145

Genomic regions, transcripts, and products

Genomic Sequence:
NC_072403.1 Chromosome 5 Reference NHGRI_mPanTro3-v1.1-hic.freeze_pri

Pathways from PubChem

General gene information

Markers

General protein information

Preferred Names
transcription factor COE1
Names
early B cell factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v1.1-hic.freeze_pri

Genomic

  1. NC_072403.1 Reference NHGRI_mPanTro3-v1.1-hic.freeze_pri

    Range
    156410284..156812484 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001140192.7XP_001140192.1  transcription factor COE1 isoform X8

    See identical proteins and their annotated locations for XP_001140192.1

    UniProtKB/TrEMBL
    A0A2J8NKC6, A0A6D2YB43, H2QRX0
    Related
    ENSPTRP00000029857.2
    Conserved Domains (3) summary
    cd01175
    Location:262346
    IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...
    pfam16422
    Location:21247
    COE1_DBD; Transcription factor COE1 DNA-binding domain
    pfam16423
    Location:347390
    COE1_HLH; Transcription factor COE1 helix-loop-helix domain
  2. XM_001140099.7XP_001140099.2  transcription factor COE1 isoform X7

    See identical proteins and their annotated locations for XP_001140099.2

    UniProtKB/TrEMBL
    A0A2I3TI72
    Conserved Domains (3) summary
    cd01175
    Location:254338
    IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...
    pfam16422
    Location:21247
    COE1_DBD; Transcription factor COE1 DNA-binding domain
    pfam16423
    Location:339382
    COE1_HLH; Transcription factor COE1 helix-loop-helix domain
  3. XM_009450060.4XP_009448335.1  transcription factor COE1 isoform X6

    See identical proteins and their annotated locations for XP_009448335.1

    Conserved Domains (3) summary
    cd01175
    Location:255339
    IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...
    pfam16422
    Location:21247
    COE1_DBD; Transcription factor COE1 DNA-binding domain
    pfam16423
    Location:340383
    COE1_HLH; Transcription factor COE1 helix-loop-helix domain
  4. XM_009450059.4XP_009448334.1  transcription factor COE1 isoform X3

    See identical proteins and their annotated locations for XP_009448334.1

    Conserved Domains (3) summary
    cd01175
    Location:263347
    IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...
    pfam16422
    Location:21247
    COE1_DBD; Transcription factor COE1 DNA-binding domain
    pfam16423
    Location:348391
    COE1_HLH; Transcription factor COE1 helix-loop-helix domain
  5. XM_016954131.3XP_016809620.1  transcription factor COE1 isoform X1

    Conserved Domains (3) summary
    cd01175
    Location:255339
    IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...
    pfam16422
    Location:21247
    COE1_DBD; Transcription factor COE1 DNA-binding domain
    pfam16423
    Location:340383
    COE1_HLH; Transcription factor COE1 helix-loop-helix domain
  6. XM_016954130.2XP_016809619.1  transcription factor COE1 isoform X5

    Conserved Domains (3) summary
    cd01175
    Location:262346
    IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...
    pfam16422
    Location:21247
    COE1_DBD; Transcription factor COE1 DNA-binding domain
    pfam16423
    Location:347390
    COE1_HLH; Transcription factor COE1 helix-loop-helix domain
  7. XM_016954129.3XP_016809618.1  transcription factor COE1 isoform X4

    Conserved Domains (3) summary
    cd01175
    Location:263347
    IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...
    pfam16422
    Location:21247
    COE1_DBD; Transcription factor COE1 DNA-binding domain
    pfam16423
    Location:348391
    COE1_HLH; Transcription factor COE1 helix-loop-helix domain
  8. XM_016954135.3XP_016809624.1  transcription factor COE1 isoform X9

    UniProtKB/TrEMBL
    A0A2I3T6E5, A0A2J8NKC1, A0A6D2X4B3
    Related
    ENSPTRP00000084777.1
    Conserved Domains (3) summary
    cd01175
    Location:130214
    IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...
    cl17007
    Location:1114
    COE_DBD; Colier/Olf/Early B-cell factor (EBF) DNA Binding Domain
    pfam16423
    Location:215258
    COE1_HLH; Transcription factor COE1 helix-loop-helix domain
  9. XM_054684758.1XP_054540733.1  transcription factor COE1 isoform X9

    UniProtKB/TrEMBL
    A0A2I3T6E5, A0A2J8NKC1, A0A6D2X4B3
  10. XM_016954132.2XP_016809621.1  transcription factor COE1 isoform X2

    UniProtKB/TrEMBL
    A0A2I3TI72
    Related
    ENSPTRP00000062030.1
    Conserved Domains (3) summary
    cd01175
    Location:254338
    IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...
    pfam16422
    Location:21247
    COE1_DBD; Transcription factor COE1 DNA-binding domain
    pfam16423
    Location:339382
    COE1_HLH; Transcription factor COE1 helix-loop-helix domain