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AGOS_AFR263C AFR263Cp [ Eremothecium gossypii ATCC 10895 ]

Gene ID: 4622073, updated on 6-Dec-2024

Summary

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Gene symbol
AGOS_AFR263C
Gene description
AFR263Cp
Locus tag
AGOS_AFR263C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Eremothecium gossypii ATCC 10895 (strain: ATCC 10895, culture-collection: ATCC:10895)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Eremothecium
Old locus tag
AFR263C
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Genomic context

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See AGOS_AFR263C in Genome Data Viewer
Location:
chromosome: VI
Exon count:
1
Sequence:
Chromosome: VI; NC_005787.5 (908589..909719, complement)

Chromosome VI - NC_005787.5Genomic Context describing neighboring genes Neighboring gene AFR261Wp Neighboring gene AFR262Cp Neighboring gene glutamate--tRNA ligase GUS1 Neighboring gene AFR265Cp

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_005787.5

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Ashbya gossypii genome as a tool for mapping the ancient Saccharomyces cerevisiae genome. Dietrich FS, et al. Science, 2004 Apr 9. PMID 15001715
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA 5'-diphosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in NAD-cap decapping IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear-transcribed mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AFR263Cp
NP_985810.1
  • Syntenic homolog of Saccharomyces cerevisiae YGL246C (RAI1); Tandem gene duplication in this genome

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_005787.5 Reference assembly

    Range
    908589..909719 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_211165.1 → NP_985810.1  AFR263Cp [Eremothecium gossypii ATCC 10895]

    See identical proteins and their annotated locations for NP_985810.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q753P9
    Conserved Domains (1) summary
    pfam08652
    Location:216 → 283
    RAI1; RAI1 like PD-(D/E)XK nuclease
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q753P9.1

Gene LinkOut

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Molecular Biology Databases
Research Materials