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SPOCK1 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 462085, updated on 2-Nov-2023

Summary

Official Symbol
SPOCK1provided by VGNC
Official Full Name
SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1provided by VGNC
Primary source
VGNC:VGNC:53273
Locus tag
CK820_G0026653
See related
Ensembl:ENSPTRG00000017270
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
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Genomic context

See SPOCK1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_04 current NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 5 NC_072403.1 (134737974..135256008, complement)

Chromosome 5 - NC_072403.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129144020 Neighboring gene ankyrin repeat domain-containing protein 49-like Neighboring gene uncharacterized LOC107974960 Neighboring gene kelch like family member 3 Neighboring gene microRNA mir-874 Neighboring gene heterogeneous nuclear ribonucleoprotein A0

Genomic regions, transcripts, and products

Genomic Sequence:
NC_072403.1 Chromosome 5 Reference NHGRI_mPanTro3-v1.1-hic.freeze_pri

Pathways from PubChem

General gene information

Markers

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
testican-1
Names
SPARC/osteonectin, cwcv and kazal like domains proteoglycan 1
sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v1.1-hic.freeze_pri

Genomic

  1. NC_072403.1 Reference NHGRI_mPanTro3-v1.1-hic.freeze_pri

    Range
    134737974..135256008 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_517947.8XP_517947.4  testican-1

    See identical proteins and their annotated locations for XP_517947.4

    UniProtKB/TrEMBL
    A0A2J8LRK5, A0A6D2XKZ6, H2QRJ5, K7DRX8
    Related
    ENSPTRP00000029534.2
    Conserved Domains (3) summary
    pfam00086
    Location:313373
    Thyroglobulin_1; Thyroglobulin type-1 repeat
    pfam07648
    Location:139178
    Kazal_2; Kazal-type serine protease inhibitor domain
    cd16237
    Location:198309
    EFh_SPARC_TICN1; EF-hand, extracellular calcium-binding (EC) motif, found in testican-1 (TICN1)