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TARS threonyl-tRNA synthetase [ Pan troglodytes (chimpanzee) ]

Gene ID: 461951, updated on 6-Oct-2018

Summary

Official Symbol
TARSprovided by VGNC
Official Full Name
threonyl-tRNA synthetaseprovided by VGNC
Primary source
VGNC:VGNC:4188
Locus tag
CK820_G0039391
See related
Ensembl:ENSPTRG00000016775
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs

Genomic context

See TARS in Genome Data Viewer
Location:
chromosome: 5
Exon count:
22
Annotation release Status Assembly Chr Location
105 current Clint_PTRv2 (GCF_002880755.1) 5 NC_036884.1 (59266039..59293312, complement)
103 previous assembly Pan_troglodytes-2.1.4 (GCF_000001515.6) 5 NC_006472.3 (81723480..81751159, complement)

Chromosome 5 - NC_036884.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 12 Neighboring gene mitochondrial import receptor subunit TOM40 homolog pseudogene Neighboring gene translation machinery-associated protein 7 pseudogene Neighboring gene uncharacterized LOC107974774

Genomic regions, transcripts, and products

Expression

  • Project title: Tissue-specific RNA-sequencing for ten non-human primate species
  • Description: Total RNA sequencing of fifteen different tissues for ten non-human primates
  • BioProject: PRJNA271912
  • Publication: PMID 25392405
  • Analysis date: Tue Apr 3 07:13:10 2018

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

General gene information

Markers

Homology

General protein information

Preferred Names
threonyl-tRNA synthetase, cytoplasmic; threonine--tRNA ligase, cytoplasmic
XP_001153971.1
XP_016808962.1
XP_016808963.1
XP_016808964.1

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Clint_PTRv2 Primary Assembly

Genomic

  1. NC_036884.1 Reference Clint_PTRv2 Primary Assembly

    Range
    59266039..59293312 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001153971.4XP_001153971.1  threonine--tRNA ligase, cytoplasmic isoform X1

    See identical proteins and their annotated locations for XP_001153971.1

    UniProtKB/TrEMBL
    H2QQQ4
    Related
    ENSPTRP00000077308.1, ENSPTRT00000084099.1
    Conserved Domains (1) summary
    cl28417
    Location:44716
    ThrS; Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
  2. XM_016953474.1XP_016808963.1  threonine--tRNA ligase, cytoplasmic isoform X3

  3. XM_016953475.2XP_016808964.1  threonine--tRNA ligase, cytoplasmic isoform X4

    Related
    ENSPTRP00000088898.1
    Conserved Domains (1) summary
    cl28417
    Location:44749
    ThrS; Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
  4. XM_016953473.1XP_016808962.1  threonine--tRNA ligase, cytoplasmic isoform X2

    Conserved Domains (1) summary
    cl28417
    Location:13657
    ThrS; Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

RNA

  1. XR_001717773.2 RNA Sequence

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