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LYSMD3 LysM domain containing 3 [ Pan troglodytes (chimpanzee) ]

Gene ID: 461758, updated on 3-Apr-2024

Summary

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Official Symbol
LYSMD3provided by VGNC
Official Full Name
LysM domain containing 3provided by VGNC
Primary source
VGNC:VGNC:6943
Locus tag
CK820_G0009209
See related
Ensembl:ENSPTRG00000017069
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 4 NC_072402.2 (25617683..25631780)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 5 NC_072403.1 (26040416..26054511)

Chromosome 4 - NC_072402.2Genomic Context describing neighboring genes Neighboring gene adhesion G protein-coupled receptor V1 Neighboring gene lysosomal enzyme trafficking factor-like Neighboring gene HIG1 domain family member 1A, mitochondrial Neighboring gene RNA polymerase III subunit G Neighboring gene metallo-beta-lactamase domain containing 2 Neighboring gene centrin 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysM and putative peptidoglycan-binding domain-containing protein 3
Names
LysM, putative peptidoglycan-binding, domain containing 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072402.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    25617683..25631780
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_517659.8 → XP_517659.3  lysM and putative peptidoglycan-binding domain-containing protein 3 isoform X1

    See identical proteins and their annotated locations for XP_517659.3

    UniProtKB/TrEMBL
    A0A2I3TLK8, A0A2J8NMN5, A0A6D2XSI7, K7A7H8
    Conserved Domains (1) summary
    cd00118
    Location:69 → 109
    LysM; Lysine Motif is a small domain involved in binding peptidoglycan

  2. XM_003310638.7 → XP_003310686.1  lysM and putative peptidoglycan-binding domain-containing protein 3 isoform X3

    See identical proteins and their annotated locations for XP_003310686.1

    UniProtKB/TrEMBL
    A0A2J8NMM3, A0A6D2W7K3, H2QR80
    Related
    ENSPTRP00000029213.4

  3. XM_063810275.1 → XP_063666345.1  lysM and putative peptidoglycan-binding domain-containing protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A2J8NMM4

  4. XM_016953009.4 → XP_016808498.1  lysM and putative peptidoglycan-binding domain-containing protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A2I3TLK8, A0A2J8NMN5, A0A6D2XSI7, K7A7H8
    Related
    ENSPTRP00000090131.1
    Conserved Domains (1) summary
    cd00118
    Location:69 → 109
    LysM; Lysine Motif is a small domain involved in binding peptidoglycan
Nucleotide Protein
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