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LOC461139 cytosolic beta-glucosidase [ Pan troglodytes (chimpanzee) ]

Gene ID: 461139, updated on 29-Mar-2024

Summary

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Gene symbol
LOC461139
Gene description
cytosolic beta-glucosidase
Locus tag
CK820_G0007616
See related
Ensembl:ENSPTRG00000043929
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as
GBA3
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Genomic context

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See LOC461139 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 3 NC_072401.2 (23108201..24251997)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 4 NC_072402.1 (23165820..24254359)

Chromosome 3 - NC_072401.2Genomic Context describing neighboring genes Neighboring gene adhesion G protein-coupled receptor A3 Neighboring gene small ribosomal subunit protein eS27-like Neighboring gene uncharacterized LOC104006004 Neighboring gene uncharacterized LOC134809761 Neighboring gene PPARG coactivator 1 alpha Neighboring gene uncharacterized LOC107974212 Neighboring gene DEAH-box helicase 15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-galactosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables beta-glucosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glycosylceramidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycosylceramide catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytosolic beta-glucosidase
Names
glucosidase, beta, acid 3 (cytosolic)
XP_003950348.1
XP_016806891.1
XP_016806892.1
XP_016806893.1
XP_054539724.1
XP_063665498.1
XP_063665500.1
XP_517125.5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072401.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    23108201..24251997
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063809428.1 → XP_063665498.1  cytosolic beta-glucosidase isoform X4

  2. XM_063809430.1 → XP_063665500.1  cytosolic beta-glucosidase isoform X6

  3. XM_003950299.6 → XP_003950348.1  cytosolic beta-glucosidase isoform X8

    See identical proteins and their annotated locations for XP_003950348.1

    UniProtKB/TrEMBL
    A0A2I3RMB0, A0A2J8NW30, A0A6D2WZ77
    Related
    ENSPTRP00000065776.1
    Conserved Domains (1) summary
    cl23725
    Location:3 → 97
    Glyco_hydro_1; Glycosyl hydrolase family 1

  4. XM_517125.9 → XP_517125.5  cytosolic beta-glucosidase isoform X2

    UniProtKB/TrEMBL
    A0A2I3TL33, A0A2J8NW19, A0A6D2YB58
    Related
    ENSPTRP00000089952.1
    Conserved Domains (1) summary
    cl23725
    Location:3 → 464
    Glyco_hydro_1; Glycosyl hydrolase family 1

  5. XM_016951404.4 → XP_016806893.1  cytosolic beta-glucosidase isoform X7

  6. XM_054683749.2 → XP_054539724.1  cytosolic beta-glucosidase isoform X1

  7. XM_016951403.4 → XP_016806892.1  cytosolic beta-glucosidase isoform X5

  8. XM_016951402.4 → XP_016806891.1  cytosolic beta-glucosidase isoform X3

RNA

  1. XR_008547754.2 RNA Sequence

  2. XR_010156492.1 RNA Sequence

  3. XR_010156491.1 RNA Sequence

  4. XR_008547751.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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