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AFAP1 actin filament associated protein 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 461111, updated on 5-Oct-2018

Summary

Official Symbol
AFAP1provided by VGNC
Official Full Name
actin filament associated protein 1provided by VGNC
Primary source
VGNC:VGNC:10814
Locus tag
CK820_G0050529
See related
Ensembl:ENSPTRG00000015897
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs

Genomic context

See AFAP1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
19
Annotation release Status Assembly Chr Location
105 current Clint_PTRv2 (GCF_002880755.1) 4 NC_036883.1 (7715644..7897094, complement)
103 previous assembly Pan_troglodytes-2.1.4 (GCF_000001515.6) 4 NC_006471.3 (7924654..8109252, complement)

Chromosome 4 - NC_036883.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104005975 Neighboring gene uncharacterized LOC750673 Neighboring gene sortilin related VPS10 domain containing receptor 2 Neighboring gene prosaposin like 1 Neighboring gene uncharacterized LOC107974179 Neighboring gene uncharacterized LOC107974180 Neighboring gene collagen alpha-1(I) chain Neighboring gene actin binding LIM protein family member 2 Neighboring gene uncharacterized LOC107974182 Neighboring gene microRNA 95

Genomic regions, transcripts, and products

Expression

  • Project title: Tissue-specific RNA-sequencing for ten non-human primate species
  • Description: Total RNA sequencing of fifteen different tissues for ten non-human primates
  • BioProject: PRJNA271912
  • Publication: PMID 25392405
  • Analysis date: Tue Apr 3 07:13:10 2018

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General gene information

Markers

Homology

General protein information

Preferred Names
actin filament-associated protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Clint_PTRv2 Primary Assembly

Genomic

  1. NC_036883.1 Reference Clint_PTRv2 Primary Assembly

    Range
    7715644..7897094 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009447333.3XP_009445608.2  actin filament-associated protein 1 isoform X3

    UniProtKB/TrEMBL
    K7DSM5
    Related
    ENSPTRP00000068226.1
    Conserved Domains (3) summary
    cd13306
    Location:143249
    PH1_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 1
    cd13307
    Location:347447
    PH2_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 2
    cl25732
    Location:561646
    SMC_N; RecF/RecN/SMC N terminal domain
  2. XM_016951278.2XP_016806767.1  actin filament-associated protein 1 isoform X2

  3. XM_009447331.3XP_009445606.2  actin filament-associated protein 1 isoform X1

    Conserved Domains (3) summary
    cd13306
    Location:143249
    PH1_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 1
    cd13307
    Location:347447
    PH2_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 2
    cl25732
    Location:645730
    SMC_N; RecF/RecN/SMC N terminal domain
  4. XM_009447332.3XP_009445607.2  actin filament-associated protein 1 isoform X1

    Related
    ENSPTRP00000027381.6
    Conserved Domains (3) summary
    cd13306
    Location:143249
    PH1_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 1
    cd13307
    Location:347447
    PH2_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 2
    cl25732
    Location:645730
    SMC_N; RecF/RecN/SMC N terminal domain
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