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DAG1 dystroglycan 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 460372, updated on 14-Feb-2019

Summary

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Official Symbol
DAG1provided by VGNC
Official Full Name
dystroglycan 1provided by VGNC
Primary source
VGNC:VGNC:6148
Locus tag
CK820_G0005098
See related
Ensembl:ENSPTRG00000014926
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all

Genomic context

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See DAG1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
8
Annotation release Status Assembly Chr Location
105 current Clint_PTRv2 (GCF_002880755.1) 3 NC_036882.1 (49730655..49799193)
104 previous assembly Pan_tro 3.0 (GCF_000001515.7) 3 NC_006490.4 (50539618..50608155)
103 previous assembly Pan_troglodytes-2.1.4 (GCF_000001515.6) 3 NC_006490.3 (50248137..50317324)

Chromosome 3 - NC_036882.1Genomic Context describing neighboring genes Neighboring gene nicolin 1 Neighboring gene aminomethyltransferase Neighboring gene bassoon presynaptic cytomatrix protein Neighboring gene acylaminoacyl-peptide hydrolase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Submit: New GeneRIF Correction

Variation

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Genotypes

Pathways from BioSystems

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  • Arrhythmogenic right ventricular cardiomyopathy (ARVC), organism-specific biosystem (from KEGG)
    Arrhythmogenic right ventricular cardiomyopathy (ARVC), organism-specific biosystemArrhythmogenic right ventricular cardiomyopathy (ARVC) is an inherited heart muscle disease that may result in arrhythmia, heart failure, and sudden death. The hallmark pathological findings are prog...
  • Arrhythmogenic right ventricular cardiomyopathy (ARVC), conserved biosystem (from KEGG)
    Arrhythmogenic right ventricular cardiomyopathy (ARVC), conserved biosystemArrhythmogenic right ventricular cardiomyopathy (ARVC) is an inherited heart muscle disease that may result in arrhythmia, heart failure, and sudden death. The hallmark pathological findings are prog...
  • Dilated cardiomyopathy, organism-specific biosystem (from KEGG)
    Dilated cardiomyopathy, organism-specific biosystemDilated cardiomyopathy (DCM) is a heart muscle disease characterised by dilation and impaired contraction of the left or both ventricles that results in progressive heart failure and sudden cardiac d...
  • Dilated cardiomyopathy, conserved biosystem (from KEGG)
    Dilated cardiomyopathy, conserved biosystemDilated cardiomyopathy (DCM) is a heart muscle disease characterised by dilation and impaired contraction of the left or both ventricles that results in progressive heart failure and sudden cardiac d...
  • ECM-receptor interaction, organism-specific biosystem (from KEGG)
    ECM-receptor interaction, organism-specific biosystemThe extracellular matrix (ECM) consists of a complex mixture of structural and functional macromolecules and serves an important role in tissue and organ morphogenesis and in the maintenance of cell ...
  • ECM-receptor interaction, conserved biosystem (from KEGG)
    ECM-receptor interaction, conserved biosystemThe extracellular matrix (ECM) consists of a complex mixture of structural and functional macromolecules and serves an important role in tissue and organ morphogenesis and in the maintenance of cell ...
  • Hypertrophic cardiomyopathy (HCM), organism-specific biosystem (from KEGG)
    Hypertrophic cardiomyopathy (HCM), organism-specific biosystemHypertrophic cardiomyopathy (HCM) is a primary myocardial disorder with an autosomal dominant pattern of inheritance that is characterized by hypertrophy of the left ventricles with histological feat...
  • Hypertrophic cardiomyopathy (HCM), conserved biosystem (from KEGG)
    Hypertrophic cardiomyopathy (HCM), conserved biosystemHypertrophic cardiomyopathy (HCM) is a primary myocardial disorder with an autosomal dominant pattern of inheritance that is characterized by hypertrophy of the left ventricles with histological feat...
  • Viral myocarditis, organism-specific biosystem (from KEGG)
    Viral myocarditis, organism-specific biosystemMyocarditis is a cardiac disease associated with inflammation and injury of the myocardium. It results from various etiologies, both noninfectious and infectious, but coxsackievirus B3 (CVB3) is stil...

General gene information

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Markers

Homology

General protein information

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Preferred Names
dystroglycan
Names
dystroglycan 1 (dystrophin-associated glycoprotein 1)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Clint_PTRv2 Primary Assembly

Genomic

  1. NC_036882.1 Reference Clint_PTRv2 Primary Assembly

    Range
    49730655..49799193
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016941097.2 → XP_016796586.1  dystroglycan

    UniProtKB/TrEMBL
    H2QML8
    Conserved Domains (4) summary
    cd11303
    Location:62 → 163
    Dystroglycan_repeat; Cadherin-like repeat domain of alpha dystroglycan
    cd11305
    Location:182 → 304
    alpha_DG_C; C-terminal domain of alpha dystroglycan
    pfam05454
    Location:606 → 895
    DAG1; Dystroglycan (Dystrophin-associated glycoprotein 1)
    cl26247
    Location:303 → 404
    DNA_pol3_delta2; DNA polymerase III, delta subunit

  2. XM_009445497.3 → XP_009443772.1  dystroglycan

    See identical proteins and their annotated locations for XP_009443772.1

    UniProtKB/TrEMBL
    H2QML8
    Conserved Domains (4) summary
    cd11303
    Location:62 → 163
    Dystroglycan_repeat; Cadherin-like repeat domain of alpha dystroglycan
    cd11305
    Location:182 → 304
    alpha_DG_C; C-terminal domain of alpha dystroglycan
    pfam05454
    Location:606 → 895
    DAG1; Dystroglycan (Dystrophin-associated glycoprotein 1)
    cl26247
    Location:303 → 404
    DNA_pol3_delta2; DNA polymerase III, delta subunit

  3. XM_003339043.4 → XP_003339091.1  dystroglycan

    See identical proteins and their annotated locations for XP_003339091.1

    UniProtKB/TrEMBL
    H2QML8
    Conserved Domains (4) summary
    cd11303
    Location:62 → 163
    Dystroglycan_repeat; Cadherin-like repeat domain of alpha dystroglycan
    cd11305
    Location:182 → 304
    alpha_DG_C; C-terminal domain of alpha dystroglycan
    pfam05454
    Location:606 → 895
    DAG1; Dystroglycan (Dystrophin-associated glycoprotein 1)
    cl26247
    Location:303 → 404
    DNA_pol3_delta2; DNA polymerase III, delta subunit

  4. XM_001164796.5 → XP_001164796.1  dystroglycan

    See identical proteins and their annotated locations for XP_001164796.1

    UniProtKB/TrEMBL
    H2QML8
    Conserved Domains (4) summary
    cd11303
    Location:62 → 163
    Dystroglycan_repeat; Cadherin-like repeat domain of alpha dystroglycan
    cd11305
    Location:182 → 304
    alpha_DG_C; C-terminal domain of alpha dystroglycan
    pfam05454
    Location:606 → 895
    DAG1; Dystroglycan (Dystrophin-associated glycoprotein 1)
    cl26247
    Location:303 → 404
    DNA_pol3_delta2; DNA polymerase III, delta subunit

  5. XM_001164638.5 → XP_001164638.1  dystroglycan

    See identical proteins and their annotated locations for XP_001164638.1

    UniProtKB/TrEMBL
    H2QML8
    Conserved Domains (4) summary
    cd11303
    Location:62 → 163
    Dystroglycan_repeat; Cadherin-like repeat domain of alpha dystroglycan
    cd11305
    Location:182 → 304
    alpha_DG_C; C-terminal domain of alpha dystroglycan
    pfam05454
    Location:606 → 895
    DAG1; Dystroglycan (Dystrophin-associated glycoprotein 1)
    cl26247
    Location:303 → 404
    DNA_pol3_delta2; DNA polymerase III, delta subunit

  6. XM_001164754.5 → XP_001164754.1  dystroglycan

    See identical proteins and their annotated locations for XP_001164754.1

    UniProtKB/TrEMBL
    H2QML8
    Conserved Domains (4) summary
    cd11303
    Location:62 → 163
    Dystroglycan_repeat; Cadherin-like repeat domain of alpha dystroglycan
    cd11305
    Location:182 → 304
    alpha_DG_C; C-terminal domain of alpha dystroglycan
    pfam05454
    Location:606 → 895
    DAG1; Dystroglycan (Dystrophin-associated glycoprotein 1)
    cl26247
    Location:303 → 404
    DNA_pol3_delta2; DNA polymerase III, delta subunit

  7. XM_009445499.3 → XP_009443774.1  dystroglycan

    See identical proteins and their annotated locations for XP_009443774.1

    UniProtKB/TrEMBL
    H2QML8
    Conserved Domains (4) summary
    cd11303
    Location:62 → 163
    Dystroglycan_repeat; Cadherin-like repeat domain of alpha dystroglycan
    cd11305
    Location:182 → 304
    alpha_DG_C; C-terminal domain of alpha dystroglycan
    pfam05454
    Location:606 → 895
    DAG1; Dystroglycan (Dystrophin-associated glycoprotein 1)
    cl26247
    Location:303 → 404
    DNA_pol3_delta2; DNA polymerase III, delta subunit

  8. XM_009445500.3 → XP_009443775.1  dystroglycan

    See identical proteins and their annotated locations for XP_009443775.1

    UniProtKB/TrEMBL
    H2QML8
    Related
    ENSPTRP00000025763.4
    Conserved Domains (4) summary
    cd11303
    Location:62 → 163
    Dystroglycan_repeat; Cadherin-like repeat domain of alpha dystroglycan
    cd11305
    Location:182 → 304
    alpha_DG_C; C-terminal domain of alpha dystroglycan
    pfam05454
    Location:606 → 895
    DAG1; Dystroglycan (Dystrophin-associated glycoprotein 1)
    cl26247
    Location:303 → 404
    DNA_pol3_delta2; DNA polymerase III, delta subunit

  9. XM_009445498.3 → XP_009443773.1  dystroglycan

    See identical proteins and their annotated locations for XP_009443773.1

    UniProtKB/TrEMBL
    H2QML8
    Conserved Domains (4) summary
    cd11303
    Location:62 → 163
    Dystroglycan_repeat; Cadherin-like repeat domain of alpha dystroglycan
    cd11305
    Location:182 → 304
    alpha_DG_C; C-terminal domain of alpha dystroglycan
    pfam05454
    Location:606 → 895
    DAG1; Dystroglycan (Dystrophin-associated glycoprotein 1)
    cl26247
    Location:303 → 404
    DNA_pol3_delta2; DNA polymerase III, delta subunit
Nucleotide Protein
Heading Accession and Version

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