NR1D2 nuclear receptor subfamily 1 group D member 2 [Pan troglodytes (chimpanzee)] - Gene

Summary

Official Symbol: NR1D2provided by VGNC
Official Full Name: nuclear receptor subfamily 1 group D member 2provided by VGNC
Primary source: VGNC:VGNC:7078
Locus tag: CK820_G0008905
See related: Ensembl:ENSPTRG00000014696
Gene type: protein coding
RefSeq status: MODEL
Organism: Pan troglodytes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 2

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2)	2	NC_086015.1 (27937745..27972960)
RS_2023_04	previous assembly	NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1)	3	NC_072401.1 (27937653..27972629)

Chromosome 2 - NC_086015.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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General gene information

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Markers

Nr1d2 (e-PCR), detects polymorphism
- UniSTS:546583

SHGC-147591 (e-PCR)
- UniSTS:175896

STS-L31785 (e-PCR)
- UniSTS:62488

NR1D2_2031 (e-PCR)
- UniSTS:280872

SHGC-76776 (e-PCR)
- UniSTS:69473

D3S3941 (e-PCR)
- UniSTS:5732

D3S3477E (e-PCR)
- UniSTS:154042

SGC34561 (e-PCR)
- UniSTS:21444

RH47404 (e-PCR)
- UniSTS:21445

PMC115222P4 (e-PCR)
- UniSTS:270297

Nr1d2 (e-PCR), detects polymorphism
- UniSTS:507099

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info	PubMed
enables nuclear receptor activity	IEA Inferred from Electronic Annotation more info	PubMed
enables zinc ion binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in cell differentiation	IEA Inferred from Electronic Annotation more info	PubMed
involved_in hormone-mediated signaling pathway	IEA Inferred from Electronic Annotation more info	PubMed
involved_in negative regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info	PubMed
involved_in positive regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: nuclear receptor subfamily 1 group D member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

NC_086015.1 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Range

27937745..27972960

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_516330.6 → XP_516330.2 nuclear receptor subfamily 1 group D member 2

See identical proteins and their annotated locations for XP_516330.2

UniProtKB/TrEMBL

A0A2I3S658, A0A2J8NPI5, A0A6D2W6B2, H2QM71

Related

ENSPTRP00000025347.3

Conserved Domains (2) summary

cd06940
Location:389 → 577

NR_LBD_REV_ERB; The ligand binding domain of REV-ERB receptors, members of the nuclear receptor superfamily

cd07166
Location:98 → 186

NR_DBD_REV_ERB; DNA-binding domain of REV-ERB receptor-like is composed of two C4-type zinc fingers