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PER2 period circadian regulator 2 [ Pan troglodytes (chimpanzee) ]

Gene ID: 460057, updated on 3-Dec-2024

Summary

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Official Symbol
PER2provided by VGNC
Official Full Name
period circadian regulator 2provided by VGNC
Primary source
VGNC:VGNC:14336
Locus tag
CK820_G0045460
See related
Ensembl:ENSPTRG00000013092
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See PER2 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
27
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 13 NC_072411.2 (140419640..140474794, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 2B NC_072400.1 (140330800..140385949, complement)

Chromosome 13 - NC_072411.2Genomic Context describing neighboring genes Neighboring gene TAR DNA-binding protein 43-like Neighboring gene hes family bHLH transcription factor 6 Neighboring gene TRAF3 interacting protein 1 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription corepressor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in circadian regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in entrainment of circadian clock by photoperiod IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
period circadian protein homolog 2
Names
period 2
period circadian clock 2
period homolog 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072411.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    140419640..140474794 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054679617.2 → XP_054535592.1  period circadian protein homolog 2 isoform X2

    UniProtKB/TrEMBL
    A0A2J8JPU7, A0A6D2X527, H2R034, K7CE70

  2. XM_016950826.4 → XP_016806315.1  period circadian protein homolog 2 isoform X1

    UniProtKB/TrEMBL
    H2R034

  3. XM_054679615.2 → XP_054535590.1  period circadian protein homolog 2 isoform X2

    UniProtKB/TrEMBL
    A0A2J8JPU7, A0A6D2X527, H2R034, K7CE70

  4. XM_063790954.1 → XP_063647024.1  period circadian protein homolog 2 isoform X2

    UniProtKB/TrEMBL
    A0A2J8JPU7, A0A6D2X527, H2R034, K7CE70

  5. XM_016950825.4 → XP_016806314.1  period circadian protein homolog 2 isoform X1

    UniProtKB/TrEMBL
    H2R034

  6. XM_054679616.2 → XP_054535591.1  period circadian protein homolog 2 isoform X2

    UniProtKB/TrEMBL
    A0A2J8JPU7, A0A6D2X527, H2R034, K7CE70

  7. XM_016950829.4 → XP_016806318.1  period circadian protein homolog 2 isoform X2

    UniProtKB/TrEMBL
    A0A2J8JPU7, A0A6D2X527, H2R034, K7CE70
    Related
    ENSPTRP00000070799.1
    Conserved Domains (2) summary
    pfam08447
    Location:346 → 430
    PAS_3; PAS fold
    pfam12114
    Location:1046 → 1228
    Period_C; Period protein 2/3C-terminal region

  8. XM_016950828.3 → XP_016806317.1  period circadian protein homolog 2 isoform X1

    UniProtKB/TrEMBL
    H2R034
    Related
    ENSPTRP00000040071.6

  9. XM_016950824.4 → XP_016806313.1  period circadian protein homolog 2 isoform X1

    UniProtKB/TrEMBL
    H2R034

  10. XM_016950830.4 → XP_016806319.1  period circadian protein homolog 2 isoform X3

    UniProtKB/TrEMBL
    H2R034
Nucleotide Protein
Heading Accession and Version

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