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COL3A1 collagen type III alpha 1 chain [ Pan troglodytes (chimpanzee) ]

Gene ID: 459815, updated on 17-Aug-2024

Summary

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Official Symbol
COL3A1provided by VGNC
Official Full Name
collagen type III alpha 1 chainprovided by VGNC
Primary source
VGNC:VGNC:10709
Locus tag
CK820_G0001727
See related
Ensembl:ENSPTRG00000012728
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See COL3A1 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
51
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 13 NC_072411.2 (91039407..91077713)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 2B NC_072400.1 (91039472..91077681)

Chromosome 13 - NC_072411.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134808033 Neighboring gene uncharacterized LOC107973724 Neighboring gene microRNA mir-1245 Neighboring gene collagen type V alpha 2 chain Neighboring gene microRNA mir-3129 Neighboring gene keratin, type I cytoskeletal 18-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent conferring tensile strength IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-1(III) chain
Names
collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072411.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    91039407..91077713
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001163809.7 → XP_001163809.1  collagen alpha-1(III) chain

    See identical proteins and their annotated locations for XP_001163809.1

    UniProtKB/TrEMBL
    A0A2J8PRU4, A0A6D2W475, H2QJ46
    Related
    ENSPTRP00000021759.4
    Conserved Domains (4) summary
    pfam01391
    Location:414 → 473
    Collagen; Collagen triple helix repeat (20 copies)
    pfam00093
    Location:32 → 88
    VWC; von Willebrand factor type C domain
    pfam01410
    Location:1233 → 1465
    COLFI; Fibrillar collagen C-terminal domain
    cl26386
    Location:245 → 452
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
Nucleotide Protein
Heading Accession and Version

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