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retn retained [ Drosophila melanogaster (fruit fly) ]

Gene ID: 45976, updated on 19-Oct-2021

Summary

Official Symbol
retnprovided by FlyBase
Official Full Name
retainedprovided by FlyBase
Primary source
FLYBASE:FBgn0004795
Locus tag
Dmel_CG5403
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
2535; BcDNA:LD35748; CG5403; Dead Ringer/Retain; Dmel\CG5403; dri; Dri; DRI; EHMT; EY2-10; l(2)02535; Retn; retn/dri
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Genomic context

See retn in Genome Data Viewer
Location:
59F5-59F5; 2-104 cM
Exon count:
13
Annotation release Status Assembly Chr Location
Release 6.32 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (23632610..23654820)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (19520133..19542343)

Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene Entomoglyceroporin 2 Neighboring gene Entomoglyceroporin 3 Neighboring gene Entomoglyceroporin 4 Neighboring gene long non-coding RNA:CR45153 Neighboring gene Phosphodiesterase 8 Neighboring gene Sulfotransferase 1

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
enables DNA-binding transcription factor binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables transcription cis-regulatory region binding IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
retained
Names
CG5403-PA
CG5403-PB
CG5403-PC
CG5403-PD
CG5403-PE
dead Ringer/Retain
dead ringer
dead-ringer
retn-PA
retn-PB
retn-PC
retn-PD
retn-PE

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033778.4 Reference assembly

    Range
    23632610..23654820
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_176254.2NP_788434.1  retained, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_788434.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q24573
    Related
    FBpp0071982, FBtr0072073
    Conserved Domains (1) summary
    smart00501
    Location:294386
    BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain
  2. NM_057516.4NP_476864.2  retained, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_476864.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q24573
    Related
    FBpp0071981, FBtr0072072
    Conserved Domains (1) summary
    smart00501
    Location:289381
    BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain
  3. NM_001299846.1NP_001286775.1  retained, isoform E [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001286775.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0B4LGB3
    Related
    FBpp0309045, FBtr0340031
    Conserved Domains (1) summary
    smart00501
    Location:37129
    BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain
  4. NM_001299844.1NP_001286773.1  retained, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001286773.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0B4LGF9
    Related
    FBpp0309043, FBtr0340029
    Conserved Domains (1) summary
    smart00501
    Location:287379
    BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain
  5. NM_001299845.1NP_001286774.1  retained, isoform D [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001286774.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0B4LHB8
    Related
    FBpp0309044, FBtr0340030
    Conserved Domains (1) summary
    smart00501
    Location:18110
    BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain
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