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ddl D-alanine--D-alanine ligase [ Paracoccus denitrificans PD1222 ]

Gene ID: 4583040, discontinued on 5-Feb-2015
  • All Gene records for this genome have been discontinued due to a change in scope for prokaryotic genomes in Gene. At the time this Gene record was discontinued, the RefSeq genome was re-annotated with the following features at this location:
Gene symbol
ddl
Gene description
D-alanine--D-alanine ligase
Locus tag
Pden_4490
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Paracoccus denitrificans PD1222 (strain: PD1222)
Lineage
Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus
Location:
chromosome: 2
Sequence:
Chromosome: 2; NC_008687.1 (1705923..1706858, complement)

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

  • D-Alanine metabolism, organism-specific biosystem (from KEGG)
    D-Alanine metabolism, organism-specific biosystem
    D-Alanine metabolism
  • D-Alanine metabolism, conserved biosystem (from KEGG)
    D-Alanine metabolism, conserved biosystem
    D-Alanine metabolism
  • Peptidoglycan biosynthesis, organism-specific biosystem (from KEGG)
    Peptidoglycan biosynthesis, organism-specific biosystemPeptidoglycan is a macromolecule made of long aminosugar strands cross-linked by short peptides. It forms the cell wall in bacteria surrounding the cytoplasmic membrane. The glycan strands are typica...
  • Peptidoglycan biosynthesis, conserved biosystem (from KEGG)
    Peptidoglycan biosynthesis, conserved biosystemPeptidoglycan is a macromolecule made of long aminosugar strands cross-linked by short peptides. It forms the cell wall in bacteria surrounding the cytoplasmic membrane. The glycan strands are typica...
  • Vancomycin resistance, organism-specific biosystem (from KEGG)
    Vancomycin resistance, organism-specific biosystemVancomycin (VCM) is a glycopeptide antibiotic agent that inhibits the synthesis of peptidolgycan in the production of bacterial cell walls. It is active in most Gram-positive bacteria and acts by bin...
  • Vancomycin resistance, conserved biosystem (from KEGG)
    Vancomycin resistance, conserved biosystemVancomycin (VCM) is a glycopeptide antibiotic agent that inhibits the synthesis of peptidolgycan in the production of bacterial cell walls. It is active in most Gram-positive bacteria and acts by bin...
Names
D-alanine--D-alanine ligase
YP_918250.1
  • D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_008687.1 Reference assembly

    Range
    1705923..1706858 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_918250.1 D-alanine--D-alanine ligase [Paracoccus denitrificans PD1222]

    Status: REVIEWED

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