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AgaP_AGAP001856 AGAP001856-PA [ Anopheles gambiae str. PEST ]

Gene ID: 4577060, updated on 28-Apr-2018

Summary

Gene symbol
AgaP_AGAP001856
Gene description
AGAP001856-PA
Primary source
VectorBase:AGAP001856
Locus tag
AgaP_AGAP001856
Gene type
protein coding
RNA name
AGAP001856-RA
RefSeq status
PROVISIONAL
Organism
Anopheles gambiae str. PEST (strain: PEST)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles
Old locus tag
AgaP_ENSANGG00000006010; ENSANGG00000006010

Genomic context

See AgaP_AGAP001856 in Genome Data Viewer
Location:
chromosome: 2R
Exon count:
8
Sequence:
Chromosome: 2R; NT_078266.2 (11449082..11460839, complement)

Chromosome 2R - NT_078266.2Genomic Context describing neighboring genes Neighboring gene tRNA Neighboring gene AGAP001854-PA Neighboring gene AGAP001858-PA Neighboring gene AGAP013198-PA

Pathways from BioSystems

  • Circadian rhythm - fly, organism-specific biosystem (from KEGG)
    Circadian rhythm - fly, organism-specific biosystemCircadian rhythm is an internal biological clock, which enables to sustain an approximately 24-hour rhythm in the absence of environmental cues. In the fruit fly Drosophila melanogaster, seven genes ...

General protein information

Preferred Names
AGAP001856-PA
XP_321212.4
  • AGAP001856-PA encoded by AGAP001856-RA

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_078266.2 Reference assembly

    Range
    11449082..11460839 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_321212.4XP_321212.4  AGAP001856-PA [Anopheles gambiae str. PEST]

    See identical proteins and their annotated locations for XP_321212.4

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    Q7PYB3
    Conserved Domains (4) summary
    smart00091
    Location:408460
    PAS; PAS domain
    cd00130
    Location:558662
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam12114
    Location:15711733
    Period_C; Period protein 2/3C-terminal region
    pfam14598
    Location:558663
    PAS_11; PAS domain
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