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LMNA lamin A/C [ Pan troglodytes (chimpanzee) ]

Gene ID: 457385, updated on 18-Aug-2023

Summary

Official Symbol
LMNAprovided by VGNC
Official Full Name
lamin A/Cprovided by VGNC
Primary source
VGNC:VGNC:11515
Locus tag
CK820_G0041294
See related
Ensembl:ENSPTRG00000001447
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
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Genomic context

See LMNA in Genome Data Viewer
Location:
chromosome: 1
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_04 current NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 1 NC_072398.1 (138266853..138292295)

Chromosome 1 - NC_072398.1Genomic Context describing neighboring genes Neighboring gene RAB25, member RAS oncogene family Neighboring gene mex-3 RNA binding family member A Neighboring gene semaphorin 4A Neighboring gene uncharacterized LOC112207367 Neighboring gene solute carrier family 25 member 44

Genomic regions, transcripts, and products

Genomic Sequence:
NC_072398.1 Chromosome 1 Reference NHGRI_mPanTro3-v1.1-hic.freeze_pri

Pathways from PubChem

General gene information

Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001098554.1NP_001092024.1  lamin

    See identical proteins and their annotated locations for NP_001092024.1

    Status: PROVISIONAL

    Source sequence(s)
    AB222149
    UniProtKB/TrEMBL
    A0A2I3RZP7, A0A2J8K546, A0A6D2W9Z9, A5A6M1
    Related
    ENSPTRP00000002448.5, ENSPTRT00000002663.5
    Conserved Domains (5) summary
    pfam00038
    Location:30386
    Filament; Intermediate filament protein
    pfam00932
    Location:433541
    LTD; Lamin Tail Domain
    pfam05384
    Location:32119
    DegS; Sensor protein DegS
    pfam09798
    Location:302463
    LCD1; DNA damage checkpoint protein
    pfam10018
    Location:191355
    Med4; Vitamin-D-receptor interacting Mediator subunit 4

RefSeqs of Annotated Genomes: GCF_028858775.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v1.1-hic.freeze_pri

Genomic

  1. NC_072398.1 Reference NHGRI_mPanTro3-v1.1-hic.freeze_pri

    Range
    138266853..138292295
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054656299.1XP_054512274.1  lamin isoform X2

    UniProtKB/TrEMBL
    A0A2I3RZP7, A0A2J8K546, A0A6D2W9Z9
  2. XM_016959917.2XP_016815406.1  lamin isoform X1

    UniProtKB/TrEMBL
    A0A2I3RW42, A0A2J8K542, A0A6D2WER0
    Related
    ENSPTRP00000082161.1
    Conserved Domains (3) summary
    pfam00932
    Location:321429
    LTD; Lamin Tail Domain
    pfam09798
    Location:190351
    LCD1; DNA damage checkpoint protein
    pfam10018
    Location:79243
    Med4; Vitamin-D-receptor interacting Mediator subunit 4
  3. XM_054656324.1XP_054512299.1  lamin isoform X3

    UniProtKB/TrEMBL
    A0A2I3RW42, A0A2I3SYV6, A0A2J8K535, A0A2J8K542, A0A6D2WER0, A0A6D2Y342