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FDPS farnesyl diphosphate synthase [ Pan troglodytes (chimpanzee) ]

Gene ID: 457366, updated on 10-Oct-2020

Summary

Official Symbol
FDPSprovided by VGNC
Official Full Name
farnesyl diphosphate synthaseprovided by VGNC
Primary source
VGNC:VGNC:539
Locus tag
CK820_G0045149
See related
Ensembl:ENSPTRG00000001422
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs

Genomic context

See FDPS in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
105 current Clint_PTRv2 (GCF_002880755.1) 1 NC_036879.1 (130108188..130120121)
104 previous assembly Pan_tro 3.0 (GCF_000001515.7) 1 NC_006468.4 (133398769..133410707)
103 previous assembly Pan_troglodytes-2.1.4 (GCF_000001515.6) 1 NC_006468.3 (133560996..133572925)

Chromosome 1 - NC_036879.1Genomic Context describing neighboring genes Neighboring gene CDC like kinase 2 Neighboring gene hyperpolarization activated cyclic nucleotide gated potassium channel 3 Neighboring gene pyruvate kinase L/R Neighboring gene RUSC1 antisense RNA 1 Neighboring gene RUN and SH3 domain containing 1 Neighboring gene microRNA mir-555

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Markers

Homology

General protein information

Preferred Names
farnesyl pyrophosphate synthase
Names
farnesyl diphosphate synthase (farnesyl pyrophosphate synthetase, dimethylallyltranstransferase, geranyltranstransferase)
XP_001160391.1
XP_003949637.1
XP_003949638.1
XP_003949639.1
XP_003949640.1
XP_009431758.1
XP_009431762.1

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Clint_PTRv2 Primary Assembly

Genomic

  1. NC_036879.1 Reference Clint_PTRv2 Primary Assembly

    Range
    130108188..130120121
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001160391.4XP_001160391.1  farnesyl pyrophosphate synthase isoform X1

    See identical proteins and their annotated locations for XP_001160391.1

    UniProtKB/TrEMBL
    H2Q079
    Conserved Domains (1) summary
    pfam00348
    Location:108374
    polyprenyl_synt; Polyprenyl synthetase
  2. XM_003949588.2XP_003949637.1  farnesyl pyrophosphate synthase isoform X2

    See identical proteins and their annotated locations for XP_003949637.1

    Conserved Domains (1) summary
    pfam00348
    Location:42308
    polyprenyl_synt; Polyprenyl synthetase
  3. XM_003949589.2XP_003949638.1  farnesyl pyrophosphate synthase isoform X2

    See identical proteins and their annotated locations for XP_003949638.1

    Conserved Domains (1) summary
    pfam00348
    Location:42308
    polyprenyl_synt; Polyprenyl synthetase
  4. XM_003949591.2XP_003949640.1  farnesyl pyrophosphate synthase isoform X3

    See identical proteins and their annotated locations for XP_003949640.1

    Conserved Domains (1) summary
    pfam00348
    Location:1202
    polyprenyl_synt; Polyprenyl synthetase
  5. XM_003949590.4XP_003949639.1  farnesyl pyrophosphate synthase isoform X1

    See identical proteins and their annotated locations for XP_003949639.1

    UniProtKB/TrEMBL
    H2Q079
    Related
    ENSPTRP00000002407.4
    Conserved Domains (1) summary
    pfam00348
    Location:108374
    polyprenyl_synt; Polyprenyl synthetase
  6. XM_009433483.3XP_009431758.1  farnesyl pyrophosphate synthase isoform X2

    See identical proteins and their annotated locations for XP_009431758.1

    Conserved Domains (1) summary
    pfam00348
    Location:42308
    polyprenyl_synt; Polyprenyl synthetase
  7. XM_009433487.3XP_009431762.1  farnesyl pyrophosphate synthase isoform X2

    See identical proteins and their annotated locations for XP_009431762.1

    Conserved Domains (1) summary
    pfam00348
    Location:42308
    polyprenyl_synt; Polyprenyl synthetase
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