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FDPS farnesyl diphosphate synthase [ Pan troglodytes (chimpanzee) ]

Gene ID: 457366, updated on 19-Feb-2025
Official Symbol
FDPSprovided by VGNC
Official Full Name
farnesyl diphosphate synthaseprovided by VGNC
Primary source
VGNC:VGNC:539
Locus tag
CK820_G0045149
See related
Ensembl:ENSPTRG00000001422
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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See FDPS in Genome Data Viewer
Location:
chromosome: 1
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 1 NC_072398.2 (93875345..93887436, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 1 NC_072398.1 (137462494..137474391)

Chromosome 1 - NC_072398.2Genomic Context describing neighboring genes Neighboring gene ASH1 like histone lysine methyltransferase Neighboring gene microRNA mir-555 Neighboring gene putative uncharacterized protein RUSC1-AS1 Neighboring gene RUN and SH3 domain containing 1 Neighboring gene pyruvate kinase L/R Neighboring gene hyperpolarization activated cyclic nucleotide gated potassium channel 3 Neighboring gene CDC like kinase 2

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables (2E,6E)-farnesyl diphosphate synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables dimethylallyltranstransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in farnesyl diphosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
farnesyl pyrophosphate synthase
Names
farnesyl diphosphate synthase (farnesyl pyrophosphate synthetase, dimethylallyltranstransferase, geranyltranstransferase)
XP_001160391.1
XP_003949638.1
XP_003949639.1
XP_003949640.1
XP_009431758.1
XP_009431762.1
XP_063668712.1
XP_063668719.1
XP_063668723.1
XP_063668727.1
XP_063668729.1
XP_063668735.1

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072398.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    93875345..93887436 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003949589.4 → XP_003949638.1  farnesyl pyrophosphate synthase isoform X2

    See identical proteins and their annotated locations for XP_003949638.1

    UniProtKB/TrEMBL
    A0A2J8Q2V2, K7AMG1
    Conserved Domains (1) summary
    pfam00348
    Location:42 → 308
    polyprenyl_synt; Polyprenyl synthetase

  2. XM_063812642.1 → XP_063668712.1  farnesyl pyrophosphate synthase isoform X2

    UniProtKB/TrEMBL
    A0A2J8Q2V2, K7AMG1

  3. XM_001160391.6 → XP_001160391.1  farnesyl pyrophosphate synthase isoform X1

    See identical proteins and their annotated locations for XP_001160391.1

    UniProtKB/TrEMBL
    A0A2J8Q2R0, A0A6D2WRD2, H2Q079, K7AMG1
    Conserved Domains (1) summary
    pfam00348
    Location:108 → 374
    polyprenyl_synt; Polyprenyl synthetase

  4. XM_063812657.1 → XP_063668727.1  farnesyl pyrophosphate synthase isoform X3

    UniProtKB/TrEMBL
    A0A2J8Q2R1

  5. XM_063812653.1 → XP_063668723.1  farnesyl pyrophosphate synthase isoform X3

    UniProtKB/TrEMBL
    A0A2J8Q2R1

  6. XM_063812659.1 → XP_063668729.1  farnesyl pyrophosphate synthase isoform X3

    UniProtKB/TrEMBL
    A0A2J8Q2R1

  7. XM_009433483.5 → XP_009431758.1  farnesyl pyrophosphate synthase isoform X2

    See identical proteins and their annotated locations for XP_009431758.1

    UniProtKB/TrEMBL
    A0A2J8Q2V2, K7AMG1
    Conserved Domains (1) summary
    pfam00348
    Location:42 → 308
    polyprenyl_synt; Polyprenyl synthetase

  8. XM_003949590.6 → XP_003949639.1  farnesyl pyrophosphate synthase isoform X1

    See identical proteins and their annotated locations for XP_003949639.1

    UniProtKB/TrEMBL
    A0A2J8Q2R0, A0A6D2WRD2, H2Q079, K7AMG1
    Related
    ENSPTRP00000002407.4
    Conserved Domains (1) summary
    pfam00348
    Location:108 → 374
    polyprenyl_synt; Polyprenyl synthetase

  9. XM_003949591.4 → XP_003949640.1  farnesyl pyrophosphate synthase isoform X3

    See identical proteins and their annotated locations for XP_003949640.1

    UniProtKB/TrEMBL
    A0A2J8Q2R1
    Conserved Domains (1) summary
    pfam00348
    Location:1 → 202
    polyprenyl_synt; Polyprenyl synthetase

  10. XM_009433487.5 → XP_009431762.1  farnesyl pyrophosphate synthase isoform X2

    See identical proteins and their annotated locations for XP_009431762.1

    UniProtKB/TrEMBL
    A0A2J8Q2V2, K7AMG1
    Conserved Domains (1) summary
    pfam00348
    Location:42 → 308
    polyprenyl_synt; Polyprenyl synthetase

  11. XM_063812649.1 → XP_063668719.1  farnesyl pyrophosphate synthase isoform X3

    UniProtKB/TrEMBL
    A0A2J8Q2R1

  12. XM_063812665.1 → XP_063668735.1  farnesyl pyrophosphate synthase isoform X3

    UniProtKB/TrEMBL
    A0A2J8Q2R1
Nucleotide Protein
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