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PPM1J protein phosphatase, Mg2+/Mn2+ dependent 1J [ Pan troglodytes (chimpanzee) ]

Gene ID: 457097, updated on 5-Oct-2018

Summary

Official Symbol
PPM1Jprovided by VGNC
Official Full Name
protein phosphatase, Mg2+/Mn2+ dependent 1Jprovided by VGNC
Primary source
VGNC:VGNC:10059
Locus tag
CK820_G0043637
See related
Ensembl:ENSPTRG00000001113
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs

Genomic context

See PPM1J in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
105 current Clint_PTRv2 (GCF_002880755.1) 1 NC_036879.1 (111445976..111451454, complement)
103 previous assembly Pan_troglodytes-2.1.4 (GCF_000001515.6) 1 NC_006468.3 (124096582..124101904)

Chromosome 1 - NC_036879.1Genomic Context describing neighboring genes Neighboring gene capping actin protein of muscle Z-line subunit alpha 1 Neighboring gene small nucleolar RNA U13 Neighboring gene Mov10 RISC complex RNA helicase Neighboring gene ras homolog family member C Neighboring gene family with sequence similarity 19 member A3, C-C motif chemokine like Neighboring gene nuclear transport factor 2 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Tissue-specific RNA-sequencing for ten non-human primate species
  • Description: Total RNA sequencing of fifteen different tissues for ten non-human primates
  • BioProject: PRJNA271912
  • Publication: PMID 25392405
  • Analysis date: Tue Apr 3 07:13:10 2018

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General gene information

Markers

Homology

General protein information

Preferred Names
protein phosphatase 1J
Names
protein phosphatase 1J (PP2C domain containing)
XP_009427519.1
XP_016781028.1

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Clint_PTRv2 Primary Assembly

Genomic

  1. NC_036879.1 Reference Clint_PTRv2 Primary Assembly

    Range
    111445976..111451454 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016925539.1XP_016781028.1  protein phosphatase 1J isoform X2

    Related
    ENSPTRP00000043088.4, ENSPTRT00000044901.4
  2. XM_009429244.2XP_009427519.1  protein phosphatase 1J isoform X1

    See identical proteins and their annotated locations for XP_009427519.1

    UniProtKB/TrEMBL
    H2R174
    Related
    ENSPTRP00000041899.4, ENSPTRT00000047165.5
    Conserved Domains (1) summary
    cd00143
    Location:106498
    PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...
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