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C1H1orf146 chromosome 1 C1orf146 homolog [ Pan troglodytes (chimpanzee) ]

Gene ID: 457019, updated on 29-Mar-2024

Summary

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Official Symbol
C1H1orf146provided by VGNC
Official Full Name
chromosome 1 C1orf146 homologprovided by VGNC
Primary source
VGNC:VGNC:4989
Locus tag
CK820_G0020640
See related
Ensembl:ENSPTRG00000030530
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See C1H1orf146 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 1 NC_072398.2 (138920929..138978823, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 1 NC_072398.1 (92316667..92378354)

Chromosome 1 - NC_072398.2Genomic Context describing neighboring genes Neighboring gene growth factor independent 1 transcriptional repressor Neighboring gene glomulin, FKBP associated protein Neighboring gene RNA polymerase II associated protein 2 Neighboring gene actin, alpha skeletal muscle-like Neighboring gene BTB domain containing 8 Neighboring gene cAMP-dependent protein kinase type I-alpha regulatory subunit-like Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in reciprocal meiotic recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptonemal complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chromosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein SPO16 homolog
Names
C1orf146

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072398.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    138920929..138978823 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_513558.6 → XP_513558.1  protein SPO16 homolog isoform X1

    See identical proteins and their annotated locations for XP_513558.1

    UniProtKB/TrEMBL
    A0A2J8MHB2, A0A6D2WX81, H2R8W3
    Related
    ENSPTRP00000052070.1
    Conserved Domains (1) summary
    pfam15162
    Location:9 → 170
    DUF4580; Domain of unknown function (DUF4580)

  2. XM_054667784.2 → XP_054523759.1  protein SPO16 homolog isoform X1

    UniProtKB/TrEMBL
    A0A2J8MHB2, A0A6D2WX81, H2R8W3

  3. XM_063816831.1 → XP_063672901.1  protein SPO16 homolog isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases