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AFG3L2 AFG3 like matrix AAA peptidase subunit 2 [ Pan troglodytes (chimpanzee) ]

Gene ID: 455507, updated on 5-Oct-2018

Summary

Official Symbol
AFG3L2provided by VGNC
Official Full Name
AFG3 like matrix AAA peptidase subunit 2provided by VGNC
Primary source
VGNC:VGNC:7811
Locus tag
CK820_G0042846
See related
Ensembl:ENSPTRG00000009879
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs

Genomic context

See AFG3L2 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
17
Annotation release Status Assembly Chr Location
105 current Clint_PTRv2 (GCF_002880755.1) 18 NC_036897.1 (2539167..2587424)
103 previous assembly Pan_troglodytes-2.1.4 (GCF_000001515.6) 18 NC_006485.3 (4174569..4223735)

Chromosome 18 - NC_036897.1Genomic Context describing neighboring genes Neighboring gene PRELI domain containing 3A Neighboring gene uncharacterized LOC107969426 Neighboring gene U7 small nuclear RNA Neighboring gene tubulin beta 6 class V Neighboring gene U6 spliceosomal RNA Neighboring gene cell death inducing DFFA like effector a

Genomic regions, transcripts, and products

Expression

  • Project title: Tissue-specific RNA-sequencing for ten non-human primate species
  • Description: Total RNA sequencing of fifteen different tissues for ten non-human primates
  • BioProject: PRJNA271912
  • Publication: PMID 25392405
  • Analysis date: Tue Apr 3 07:13:10 2018

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General gene information

Markers

Homology

General protein information

Preferred Names
AFG3-like protein 2
Names
AFG3 ATPase family gene 3-like 2
AFG3-like AAA ATPase 2

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Clint_PTRv2 Primary Assembly

Genomic

  1. NC_036897.1 Reference Clint_PTRv2 Primary Assembly

    Range
    2539167..2587424
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_512199.5XP_512199.2  AFG3-like protein 2 isoform X1

    See identical proteins and their annotated locations for XP_512199.2

    UniProtKB/TrEMBL
    H2QEA1
    Related
    ENSPTRP00000016808.4, ENSPTRT00000018144.5
    Conserved Domains (2) summary
    pfam06480
    Location:146242
    FtsH_ext; FtsH Extracellular
    cl27568
    Location:253746
    TIP49; TIP49 C-terminus
  2. XM_016933277.1XP_016788766.1  AFG3-like protein 2 isoform X3

  3. XM_016933276.1XP_016788765.1  AFG3-like protein 2 isoform X2

    Conserved Domains (4) summary
    TIGR01241
    Location:175668
    FtsH_fam; ATP-dependent metalloprotease FtsH
    pfam00004
    Location:267398
    AAA; ATPase family associated with various cellular activities (AAA)
    pfam01434
    Location:484666
    Peptidase_M41; Peptidase family M41
    pfam06480
    Location:68164
    FtsH_ext; FtsH Extracellular
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