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LOC454266 polycystin-1-like protein 2 [ Pan troglodytes (chimpanzee) ]

Gene ID: 454266, updated on 29-Mar-2024

Summary

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Gene symbol
LOC454266
Gene description
polycystin-1-like protein 2
Locus tag
CK820_G0029348
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as
PKD1L2
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Genomic context

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See LOC454266 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
38
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 18 NC_072416.2 (79262543..79363743, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 16 NC_072414.1 (79262447..79381395, complement)

Chromosome 18 - NC_072416.2Genomic Context describing neighboring genes Neighboring gene chromosome 16 C16orf46 homolog Neighboring gene ATM interactor Neighboring gene U6 spliceosomal RNA Neighboring gene glycine cleavage system protein H Neighboring gene beta-carotene oxygenase 1 Neighboring gene gigaxonin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in detection of mechanical stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polycystic kidney disease protein 1-like 2; LOW QUALITY PROTEIN: polycystin-1-like protein 2
Names
polycystic kidney disease 1-like 2
polycystin 1 like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072416.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    79262543..79363743 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054668490.2 → XP_054524465.2  LOW QUALITY PROTEIN: polycystin-1-like protein 2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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