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ABAT 4-aminobutyrate aminotransferase [ Pan troglodytes (chimpanzee) ]

Gene ID: 453903, updated on 6-Oct-2018

Summary

Official Symbol
ABATprovided by VGNC
Official Full Name
4-aminobutyrate aminotransferaseprovided by VGNC
Primary source
VGNC:VGNC:13649
Locus tag
CK820_G0031214
See related
Ensembl:ENSPTRG00000007746
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs

Genomic context

See ABAT in Genome Data Viewer
Location:
chromosome: 16
Exon count:
21
Annotation release Status Assembly Chr Location
105 current Clint_PTRv2 (GCF_002880755.1) 16 NC_036895.1 (8989601..9098201)
103 previous assembly Pan_troglodytes-2.1.4 (GCF_000001515.6) 16 NC_006483.3 (8809603..8922260)

Chromosome 16 - NC_036895.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 114 Neighboring gene methyltransferase like 22 Neighboring gene U7 small nuclear RNA Neighboring gene transmembrane protein 186 Neighboring gene phosphomannomutase 2

Genomic regions, transcripts, and products

Expression

  • Project title: Tissue-specific RNA-sequencing for ten non-human primate species
  • Description: Total RNA sequencing of fifteen different tissues for ten non-human primates
  • BioProject: PRJNA271912
  • Publication: PMID 25392405
  • Analysis date: Tue Apr 3 07:13:10 2018

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

General gene information

Markers

Homology

  • Homologs of the ABAT gene: The ABAT gene is conserved in human, dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, C.elegans, S.cerevisiae, K.lactis, E.gossypii, S.pombe, M.oryzae, N.crassa, and frog.
  • Orthologs from Annotation Pipeline: 249 organisms have orthologs with human gene ABAT

General protein information

Preferred Names
4-aminobutyrate aminotransferase, mitochondrial
XP_016784865.1
XP_016784866.1
XP_016784867.1
XP_016784868.1
XP_016784869.1
XP_016784870.1
XP_016784871.1

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Clint_PTRv2 Primary Assembly

Genomic

  1. NC_036895.1 Reference Clint_PTRv2 Primary Assembly

    Range
    8989601..9098201
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016929377.2XP_016784866.1  4-aminobutyrate aminotransferase, mitochondrial isoform X2

    UniProtKB/TrEMBL
    H2QAJ4
    Conserved Domains (1) summary
    TIGR00699
    Location:34496
    GABAtrns_euk; 4-aminobutyrate aminotransferase, eukaryotic type
  2. XM_016929381.2XP_016784870.1  4-aminobutyrate aminotransferase, mitochondrial isoform X2

    UniProtKB/TrEMBL
    H2QAJ4
    Related
    ENSPTRP00000013232.6
    Conserved Domains (1) summary
    TIGR00699
    Location:34496
    GABAtrns_euk; 4-aminobutyrate aminotransferase, eukaryotic type
  3. XM_016929380.2XP_016784869.1  4-aminobutyrate aminotransferase, mitochondrial isoform X2

    UniProtKB/TrEMBL
    H2QAJ4
    Conserved Domains (1) summary
    TIGR00699
    Location:34496
    GABAtrns_euk; 4-aminobutyrate aminotransferase, eukaryotic type
  4. XM_016929378.2XP_016784867.1  4-aminobutyrate aminotransferase, mitochondrial isoform X2

    UniProtKB/TrEMBL
    H2QAJ4
    Conserved Domains (1) summary
    TIGR00699
    Location:34496
    GABAtrns_euk; 4-aminobutyrate aminotransferase, eukaryotic type
  5. XM_016929379.2XP_016784868.1  4-aminobutyrate aminotransferase, mitochondrial isoform X2

    UniProtKB/TrEMBL
    H2QAJ4
    Related
    ENSPTRP00000083953.1
    Conserved Domains (1) summary
    TIGR00699
    Location:34496
    GABAtrns_euk; 4-aminobutyrate aminotransferase, eukaryotic type
  6. XM_016929382.2XP_016784871.1  4-aminobutyrate aminotransferase, mitochondrial isoform X2

    UniProtKB/TrEMBL
    H2QAJ4
    Conserved Domains (1) summary
    TIGR00699
    Location:34496
    GABAtrns_euk; 4-aminobutyrate aminotransferase, eukaryotic type
  7. XM_016929376.2XP_016784865.1  4-aminobutyrate aminotransferase, mitochondrial isoform X1

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