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RNASEH2B ribonuclease H2 subunit B [ Pan troglodytes (chimpanzee) ]

Gene ID: 452726, updated on 3-Apr-2024

Summary

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Official Symbol
RNASEH2Bprovided by VGNC
Official Full Name
ribonuclease H2 subunit Bprovided by VGNC
Primary source
VGNC:VGNC:5101
Locus tag
CK820_G0031588
See related
Ensembl:ENSPTRG00000005886
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 13
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 14 NC_072412.2 (56505970..56588972)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 13 NC_072411.1 (51872862..51945639)

Chromosome 14 - NC_072412.2Genomic Context describing neighboring genes Neighboring gene deleted in lymphocytic leukemia 7 Neighboring gene uncharacterized LOC134808199 Neighboring gene uncharacterized LOC134808200 Neighboring gene uncharacterized LOC104001840 Neighboring gene guanylate cyclase soluble subunit beta-2 Neighboring gene chromosome 14 C13orf42 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in RNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonuclease H2 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ribonuclease H2 subunit B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072412.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    56505970..56588972
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001158221.6 → XP_001158221.1  ribonuclease H2 subunit B isoform X1

    See identical proteins and their annotated locations for XP_001158221.1

    UniProtKB/TrEMBL
    A0A2J8L8P5, A0A6D2XI31, K7DDV4
    Related
    ENSPTRP00000085156.1
    Conserved Domains (1) summary
    pfam09468
    Location:17 → 301
    RNase_H2-Ydr279; Ydr279p protein family (RNase H2 complex component)

  2. XM_001158160.8 → XP_001158160.1  ribonuclease H2 subunit B isoform X8

    See identical proteins and their annotated locations for XP_001158160.1

    UniProtKB/TrEMBL
    K7CBM1
    Related
    ENSPTRP00000092066.1
    Conserved Domains (1) summary
    cd09270
    Location:17 → 187
    RNase_H2-B; Ribonuclease H2-B is a subunit of the eukaryotic RNase H complex which cleaves RNA-DNA hybrids

  3. XM_054665328.2 → XP_054521303.1  ribonuclease H2 subunit B isoform X6

  4. XM_016925295.3 → XP_016780784.1  ribonuclease H2 subunit B isoform X3

  5. XM_009426980.4 → XP_009425255.1  ribonuclease H2 subunit B isoform X5

    Conserved Domains (1) summary
    cd09270
    Location:17 → 187
    RNase_H2-B; Ribonuclease H2-B is a subunit of the eukaryotic RNase H complex which cleaves RNA-DNA hybrids

  6. XM_063792563.1 → XP_063648633.1  ribonuclease H2 subunit B isoform X4

    UniProtKB/TrEMBL
    A0A2J8L8Q3, A0A6D2Y4L4, H2R2X9

  7. XM_063792566.1 → XP_063648636.1  ribonuclease H2 subunit B isoform X9

  8. XM_009426975.5 → XP_009425250.1  ribonuclease H2 subunit B isoform X4

    See identical proteins and their annotated locations for XP_009425250.1

    UniProtKB/TrEMBL
    A0A2J8L8Q3, A0A6D2Y4L4, H2R2X9
    Related
    ENSPTRP00000044596.5
    Conserved Domains (1) summary
    pfam09468
    Location:7 → 271
    RNase_H2-Ydr279; Ydr279p protein family (RNase H2 complex component)

  9. XM_063792564.1 → XP_063648634.1  ribonuclease H2 subunit B isoform X7

    UniProtKB/TrEMBL
    A0A2I3RTU5

  10. XM_063792565.1 → XP_063648635.1  ribonuclease H2 subunit B isoform X7

    UniProtKB/TrEMBL
    A0A2I3RTU5

  11. XM_009426977.5 → XP_009425252.1  ribonuclease H2 subunit B isoform X4

    See identical proteins and their annotated locations for XP_009425252.1

    UniProtKB/TrEMBL
    A0A2J8L8Q3, A0A6D2Y4L4, H2R2X9
    Conserved Domains (1) summary
    pfam09468
    Location:7 → 271
    RNase_H2-Ydr279; Ydr279p protein family (RNase H2 complex component)

  12. XM_016925294.4 → XP_016780783.1  ribonuclease H2 subunit B isoform X2

  13. XM_016925297.4 → XP_016780786.1  ribonuclease H2 subunit B isoform X7

    UniProtKB/TrEMBL
    A0A2I3RTU5
    Related
    ENSPTRP00000068149.1
    Conserved Domains (1) summary
    cd09270
    Location:4 → 248
    RNase_H2-B; Ribonuclease H2-B is a subunit of the eukaryotic RNase H complex which cleaves RNA-DNA hybrids

RNA

  1. XR_010150742.1 RNA Sequence

  2. XR_010150741.1 RNA Sequence

  3. XR_010150744.1 RNA Sequence

  4. XR_010150743.1 RNA Sequence

  5. XR_010150745.1 RNA Sequence

  6. XR_010150739.1 RNA Sequence

  7. XR_010150740.1 RNA Sequence

Nucleotide Protein
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