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NR4A1 nuclear receptor subfamily 4 group A member 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 451913, updated on 18-Aug-2023

Summary

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Official Symbol
NR4A1provided by VGNC
Official Full Name
nuclear receptor subfamily 4 group A member 1provided by VGNC
Primary source
VGNC:VGNC:5507
Locus tag
CK820_G0039616
See related
Ensembl:ENSPTRG00000004966
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See NR4A1 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_04 current NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 12 NC_072410.1 (42488760..42510975, complement)

Chromosome 12 - NC_072410.1Genomic Context describing neighboring genes Neighboring gene small integral membrane protein 41 Neighboring gene autophagy related 101 Neighboring gene trafficking regulator and scaffold protein tamalin Neighboring gene U6 spliceosomal RNA Neighboring gene activin A receptor type 1B

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_072410.1 Chromosome 12 Reference NHGRI_mPanTro3-v1.1-hic.freeze_pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Major chimpanzee-specific structural changes in sperm development-associated genes. Kim RN, et al. Funct Integr Genomics, 2011 Sep. PMID 21484476

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

General protein information

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Preferred Names
nuclear receptor subfamily 4 group A member 1
Names
orphan nuclear receptor NR4A1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v1.1-hic.freeze_pri

Genomic

  1. NC_072410.1 Reference NHGRI_mPanTro3-v1.1-hic.freeze_pri

    Range
    42488760..42510975 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009425363.3 → XP_009423638.1  nuclear receptor subfamily 4 group A member 1 isoform X5

    UniProtKB/TrEMBL
    A0A2J8KDI6, A0A803KI99, K7D0Y5
    Conserved Domains (2) summary
    cl02596
    Location:337 → 364
    NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers
    cl11397
    Location:362 → 576
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

  2. XM_009425361.3 → XP_009423636.1  nuclear receptor subfamily 4 group A member 1 isoform X1

    UniProtKB/TrEMBL
    A0A2J8KDI6, A0A803KI99, K7D0Y5
    Conserved Domains (2) summary
    cd07348
    Location:433 → 670
    NR_LBD_NGFI-B; The ligand binding domain of Nurr1, a member of conserved family of nuclear receptors
    cd06969
    Location:337 → 411
    NR_DBD_NGFI-B; DNA-binding domain of the orphan nuclear receptor, nerve growth factor-induced-B

  3. XM_003313691.5 → XP_003313739.1  nuclear receptor subfamily 4 group A member 1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8KDI5, A0A2J8KDI6, A0A6D2WB54, A0A803KI99, H2QZT3, K7D0Y5
    Related
    ENSPTRP00000039485.4
    Conserved Domains (2) summary
    cd07348
    Location:415 → 652
    NR_LBD_NGFI-B; The ligand binding domain of Nurr1, a member of conserved family of nuclear receptors
    cd06969
    Location:319 → 393
    NR_DBD_NGFI-B; DNA-binding domain of the orphan nuclear receptor, nerve growth factor-induced-B

  4. XM_003952188.5 → XP_003952237.1  nuclear receptor subfamily 4 group A member 1 isoform X4

    See identical proteins and their annotated locations for XP_003952237.1

    UniProtKB/TrEMBL
    A0A2J8KDI8, A0A803KLC9, G2HHP1, H2QZT3, K7BQ21
    Conserved Domains (2) summary
    cd07348
    Location:361 → 598
    NR_LBD_NGFI-B; The ligand binding domain of Nurr1, a member of conserved family of nuclear receptors
    cd06969
    Location:265 → 339
    NR_DBD_NGFI-B; DNA-binding domain of the orphan nuclear receptor, nerve growth factor-induced-B

  5. XM_009425362.4 → XP_009423637.1  nuclear receptor subfamily 4 group A member 1 isoform X3

    UniProtKB/TrEMBL
    G2HHP1
    Conserved Domains (2) summary
    cd07348
    Location:365 → 602
    NR_LBD_NGFI-B; The ligand binding domain of Nurr1, a member of conserved family of nuclear receptors
    cd06969
    Location:269 → 343
    NR_DBD_NGFI-B; DNA-binding domain of the orphan nuclear receptor, nerve growth factor-induced-B

  6. XM_003313689.5 → XP_003313737.1  nuclear receptor subfamily 4 group A member 1 isoform X4

    See identical proteins and their annotated locations for XP_003313737.1

    UniProtKB/TrEMBL
    A0A2J8KDI8, A0A803KLC9, G2HHP1, H2QZT3, K7BQ21
    Related
    ENSPTRP00000062138.1
    Conserved Domains (2) summary
    cd07348
    Location:361 → 598
    NR_LBD_NGFI-B; The ligand binding domain of Nurr1, a member of conserved family of nuclear receptors
    cd06969
    Location:265 → 339
    NR_DBD_NGFI-B; DNA-binding domain of the orphan nuclear receptor, nerve growth factor-induced-B
Nucleotide Protein
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