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SC5D sterol-C5-desaturase [ Pan troglodytes (chimpanzee) ]

Gene ID: 451624, updated on 17-Aug-2024
Official Symbol
SC5Dprovided by VGNC
Official Full Name
sterol-C5-desaturaseprovided by VGNC
Primary source
VGNC:VGNC:12803
Locus tag
CK820_G0015634
See related
Ensembl:ENSPTRG00000046128
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as
SC5DL
Orthologs
human mouse all
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See SC5D in Genome Data Viewer
Location:
chromosome: 9
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 9 NC_072407.2 (123244561..123260564)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 11 NC_072409.1 (122462698..122483498)

Chromosome 9 - NC_072407.2Genomic Context describing neighboring genes Neighboring gene tubulin folding cofactor E like Neighboring gene uncharacterized LOC107967237 Neighboring gene tectorin alpha Neighboring gene uncharacterized LOC134807387 Neighboring gene uncharacterized LOC134807388 Neighboring gene sortilin related receptor 1

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables C-5 sterol desaturase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol biosynthetic process via lathosterol IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
lathosterol oxidase
Names
sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like
XP_001167285.1
XP_508825.1

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072407.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    123244561..123260564
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001167285.6 → XP_001167285.1  lathosterol oxidase

    See identical proteins and their annotated locations for XP_001167285.1

    UniProtKB/TrEMBL
    A0A2I3RQB9, A0A2J8N215, A0A6D2XD56, K6ZUY4
    Related
    ENSPTRP00000066518.1
    Conserved Domains (1) summary
    COG3000
    Location:34 → 257
    ERG3; Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily [Lipid transport and metabolism]

  2. XM_508825.7 → XP_508825.1  lathosterol oxidase

    See identical proteins and their annotated locations for XP_508825.1

    UniProtKB/TrEMBL
    A0A2I3RQB9, A0A2J8N215, A0A6D2XD56, K6ZUY4
    Conserved Domains (1) summary
    COG3000
    Location:34 → 257
    ERG3; Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily [Lipid transport and metabolism]
Nucleotide Protein
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