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fbxl3b F-box and leucine-rich repeat protein 3b [ Danio rerio (zebrafish) ]

Gene ID: 450055, updated on 10-Oct-2019

Summary

Official Symbol
fbxl3bprovided by ZNC
Official Full Name
F-box and leucine-rich repeat protein 3bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-041010-178
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
wu:fd52d09; zgc:101682
Annotation information
Annotation category: partial on reference assembly

Genomic context

See fbxl3b in Genome Data Viewer
Location:
chromosome: 6
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (59935102..59968146, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (60003117..60012325, complement)
103 previous assembly Zv9 (GCF_000002035.4) 6 NC_007117.5 (59684155..59693363, complement)

Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene G-protein coupled bile acid receptor 1-like Neighboring gene angio-associated, migratory cell protein Neighboring gene nuclear FMR1 interacting protein 1 Neighboring gene zgc:65895 Neighboring gene uncharacterized LOC103910356 Neighboring gene mitochondrial translational release factor 1

Genomic regions, transcripts, and products

Pathways from BioSystems

General gene information

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
contributes_to ubiquitin protein ligase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
G2/M transition of mitotic cell cycle IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
entrainment of circadian clock by photoperiod IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of cell cycle IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
SCF ubiquitin ligase complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytosol IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
uncharacterized protein LOC450055

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001006075.1NP_001006075.1  uncharacterized protein LOC450055

    See identical proteins and their annotated locations for NP_001006075.1

    Status: PREDICTED

    Source sequence(s)
    BC083245
    UniProtKB/TrEMBL
    Q5XJQ3
    Conserved Domains (1) summary
    pfam12937
    Location:3980
    F-box-like; F-box-like

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007117.7 Reference GRCz11 Primary Assembly

    Range
    59935102..59968146 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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