Format

Send to:

Choose Destination

SOD2 superoxide dismutase 2 [ Pan troglodytes (chimpanzee) ]

Gene ID: 449634, updated on 7-Oct-2018

Summary

Official Symbol
SOD2provided by VGNC
Official Full Name
superoxide dismutase 2provided by VGNC
Primary source
VGNC:VGNC:52105
Locus tag
CK820_G0038107
See related
Ensembl:ENSPTRG00000018757
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Annotation information
Annotation category: partial on reference assembly
Orthologs

Genomic context

See SOD2 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
105 current Clint_PTRv2 (GCF_002880755.1) 6 NC_036885.1 (157155249..157165553, complement)
103 previous assembly Pan_troglodytes-2.1.4 (GCF_000001515.6) 6 NC_006473.3 (161441828..161452214, complement)

Chromosome 6 - NC_036885.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L3 pseudogene Neighboring gene uncharacterized LOC107975377 Neighboring gene U4atac minor spliceosomal RNA Neighboring gene heterogeneous nuclear ribonucleoprotein H2-like

Genomic regions, transcripts, and products

Expression

  • Project title: Tissue-specific RNA-sequencing for ten non-human primate species
  • Description: Total RNA sequencing of fifteen different tissues for ten non-human primates
  • BioProject: PRJNA271912
  • Publication: PMID 25392405
  • Analysis date: Tue Apr 3 07:13:10 2018

Pathways from BioSystems

  • FoxO signaling pathway, organism-specific biosystem (from KEGG)
    FoxO signaling pathway, organism-specific biosystemThe forkhead box O (FOXO) family of transcription factors regulates the expression of genes in cellular physiological events including apoptosis, cell-cycle control, glucose metabolism, oxidative str...
  • Huntington's disease, organism-specific biosystem (from KEGG)
    Huntington's disease, organism-specific biosystemHuntington disease (HD) is an autosomal-dominant neurodegenerative disorder that primarily affects medium spiny striatal neurons (MSN). The symptoms are choreiform, involuntary movements, personality...
  • Huntington's disease, conserved biosystem (from KEGG)
    Huntington's disease, conserved biosystemHuntington disease (HD) is an autosomal-dominant neurodegenerative disorder that primarily affects medium spiny striatal neurons (MSN). The symptoms are choreiform, involuntary movements, personality...
  • Longevity regulating pathway, organism-specific biosystem (from KEGG)
    Longevity regulating pathway, organism-specific biosystemRegulation of longevity depends on genetic and environmental factors. Caloric restriction (CR), that is limiting food intake, is recognized in mammals as the best characterized and most reproducible ...
  • Longevity regulating pathway - multiple species, organism-specific biosystem (from KEGG)
    Longevity regulating pathway - multiple species, organism-specific biosystemAging is a complex process of accumulation of molecular, cellular, and organ damage, leading to loss of function and increased vulnerability to disease and death. Despite the complexity of aging, rec...
  • Longevity regulating pathway - multiple species, conserved biosystem (from KEGG)
    Longevity regulating pathway - multiple species, conserved biosystemAging is a complex process of accumulation of molecular, cellular, and organ damage, leading to loss of function and increased vulnerability to disease and death. Despite the complexity of aging, rec...
  • Peroxisome, organism-specific biosystem (from KEGG)
    Peroxisome, organism-specific biosystemPeroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ...
  • Peroxisome, conserved biosystem (from KEGG)
    Peroxisome, conserved biosystemPeroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ...

General gene information

Markers

Homology

General protein information

Preferred Names
superoxide dismutase [Mn], mitochondrial
Names
Mn-superoxide dismutase
superoxide dismutase 2, mitochondrial
NP_001009022.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001009022.1NP_001009022.1  superoxide dismutase [Mn], mitochondrial

    See identical proteins and their annotated locations for NP_001009022.1

    Status: PROVISIONAL

    Source sequence(s)
    AB087274
    UniProtKB/Swiss-Prot
    Q8HXP7
    Related
    ENSPTRP00000083441.1, ENSPTRT00000101651.1
    Conserved Domains (1) summary
    COG0605
    Location:1199
    SodA; Superoxide dismutase [Inorganic ion transport and metabolism]

RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Clint_PTRv2 Primary Assembly

Genomic

  1. NC_036885.1 Reference Clint_PTRv2 Primary Assembly

    Range
    157155249..157165553 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center