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gcm2 glial cells missing transcription factor 2 [ Danio rerio (zebrafish) ]

Gene ID: 449615, updated on 16-Oct-2021

Summary

Official Symbol
gcm2provided by ZNC
Official Full Name
glial cells missing transcription factor 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-050127-1
See related
Ensembl:ENSDARG00000045413
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
GCMb; Gcm-2
Orthologs
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Genomic context

See gcm2 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (8827594..8831950, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (8687217..8691643, complement)
103 previous assembly Zv9 (GCF_000002035.4) 24 NC_007135.5 (8627838..8632283, complement)

Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene transcription factor AP-2 alpha Neighboring gene transmembrane protein 14Ca Neighboring gene male germ cell-associated kinase Neighboring gene uncharacterized LOC110438349 Neighboring gene synaptonemal complex protein 2-like

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Homology

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus IC
Inferred by Curator
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
chorion-specific transcription factor GCMb
Names
gcmB transcription factor
glial cell missing-like protein
glial cells missing homolog 2
mero
merovingian
transcription factor glial cells missing-2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001005603.1NP_001005603.1  chorion-specific transcription factor GCMb

    See identical proteins and their annotated locations for NP_001005603.1

    Status: PROVISIONAL

    Source sequence(s)
    AB099697
    UniProtKB/TrEMBL
    Q68BU9
    Related
    ENSDARP00000066779.4, ENSDART00000066780.6
    Conserved Domains (1) summary
    pfam03615
    Location:37174
    GCM; GCM motif protein

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007135.7 Reference GRCz11 Primary Assembly

    Range
    8827594..8831950 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005162569.4XP_005162626.1  chorion-specific transcription factor GCMb isoform X1

    See identical proteins and their annotated locations for XP_005162626.1

    UniProtKB/TrEMBL
    Q5TLZ9
    Related
    ENSDARP00000113822.1, ENSDART00000143501.2
    Conserved Domains (1) summary
    pfam03615
    Location:19156
    GCM; GCM motif protein
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