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GGNBP1 gametogenetin binding protein 1 (pseudogene) [ Homo sapiens (human) ]

Gene ID: 449520, updated on 18-Aug-2020

Summary

Official Symbol
GGNBP1provided by HGNC
Official Full Name
gametogenetin binding protein 1 (pseudogene)provided by HGNC
Primary source
HGNC:HGNC:19427
See related
Ensembl:ENSG00000204188 MIM:609495
Gene type
pseudo
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This gene is the ortholog of the mouse gametogenetin-binding protein 1 gene. In human, the open reading frame is disrupted by a nonsense mutation after 8-aa; consequently, this gene is currently considered to be a unitary pseudogene in human even though it is functional in other mammals. [provided by RefSeq, Aug 2009]
Expression
Biased expression in testis (RPKM 1.5), lymph node (RPKM 0.2) and 2 other tissues See more

Genomic context

See GGNBP1 in Genome Data Viewer
Location:
6p21.31
Exon count:
6
Annotation release Status Assembly Chr Location
109.20200815 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (33583699..33589026)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (33551476..33556803)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene RNA, 7SL, cytoplasmic 26, pseudogene Neighboring gene BCL2 antagonist/killer 1 Neighboring gene long intergenic non-protein coding RNA 336 Neighboring gene uncharacterized LOC101929188 Neighboring gene uncharacterized LOC105375023 Neighboring gene inositol 1,4,5-trisphosphate receptor type 3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by GOA

Process Evidence Code Pubs
cell differentiation IEA
Inferred from Electronic Annotation
more info
 
mitochondrial fission IEA
Inferred from Electronic Annotation
more info
 
multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
spermatogenesis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_028361.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AY383627, Z93017
    Related
    ENST00000374458.5

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20200815

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    33583699..33589026
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001005478.1: Suppressed sequence

    Description
    NM_001005478.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
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