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sumo1 small ubiquitin like modifier 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 448691, updated on 24-Jun-2020

Summary

Official Symbol
sumo1provided by Xenbase
Official Full Name
small ubiquitin like modifier 1provided by Xenbase
Primary source
Xenbase:XB-GENE-978491
See related
Ensembl:ENSXETG00000017792
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
dap1; gmp1; pic1; smt3; ubl1; dap-1; ofc10; senp2; smt3c; smt3h3; sumo-1; xsumo1; sumo1-a; sumo1-b; xsumo-1
Orthologs
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Genomic context

See sumo1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
5
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 9 NC_030685.2 (52303518..52316095, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 9 NC_030685.1 (46876065..46888317)

Chromosome 9 - NC_030685.2Genomic Context describing neighboring genes Neighboring gene cyclin-dependent kinase 15 Neighboring gene frizzled class receptor 7 Neighboring gene KIAA2012 Neighboring gene small nucleolar RNA SNORD70 Neighboring gene small nucleolar RNA SNORD70 Neighboring gene NOP58 ribonucleoprotein

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Homology

Clone Names

  • MGC89967

General protein information

Preferred Names
small ubiquitin-related modifier 1
Names
SMT3 suppressor of mif two 3 homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001005111.1NP_001005111.1  small ubiquitin-related modifier 1

    See identical proteins and their annotated locations for NP_001005111.1

    Status: PROVISIONAL

    Source sequence(s)
    BC077048
    UniProtKB/Swiss-Prot
    Q6DEP7
    Related
    ENSXETP00000051990.1, ENSXETT00000053417.1
    Conserved Domains (1) summary
    cd01763
    Location:1498
    Sumo; Small ubiquitin-related modifier (SUMO)

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    52303518..52316095 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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