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wnt5b Wnt family member 5B [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 448452, updated on 4-Nov-2024

Summary

Official Symbol
wnt5bprovided by Xenbase
Official Full Name
Wnt family member 5Bprovided by Xenbase
Primary source
Xenbase:XB-GENE-480396
See related
Ensembl:ENSXETG00000044755 AllianceGenome:Xenbase:XB-GENE-480396
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
wnt-5b; xwnt5b
Summary
Predicted to enable signaling receptor binding activity. Acts upstream of or within gastrulation with mouth forming second. Predicted to be located in extracellular region. Orthologous to human WNT5B (Wnt family member 5B). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See wnt5b in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (9365361..9455621, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683430.1 (20793..106120, complement)

Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene adiponectin receptor 2 Neighboring gene uncharacterized LOC101731549 Neighboring gene F-box and leucine-rich repeat protein 14 Neighboring gene ELKS/RAB6-interacting/CAST family member 1 Neighboring gene RAD52 homolog, DNA repair protein

Genomic regions, transcripts, and products

General protein information

Preferred Names
protein Wnt-5b
Names
wingless-type MMTV integration site family member 5B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001006766.1NP_001006767.1  protein Wnt-5b precursor

    See identical proteins and their annotated locations for NP_001006767.1

    Status: PROVISIONAL

    Source sequence(s)
    BC075560
    UniProtKB/TrEMBL
    F7DI28, Q6DII0
    Related
    ENSXETP00000020729.5, ENSXETT00000020729.5
    Conserved Domains (1) summary
    pfam00110
    Location:51360
    wnt; wnt family

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    9365361..9455621 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012958845.3XP_012814299.1  protein Wnt-5b isoform X1

    UniProtKB/TrEMBL
    A0A803JA58, F7DI28
    Related
    ENSXETP00000104781.1, ENSXETT00000119697.1
    Conserved Domains (1) summary
    cl38924
    Location:64375
    Wnt; Wnt domain found in the WNT signaling gene family, also called Wingless-type mouse mammary tumor virus (MMTV) integration site family