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id4 inhibitor of DNA binding 4, HLH protein [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 448114, updated on 15-Nov-2019

Summary

Official Symbol
id4provided by Xenbase
Official Full Name
inhibitor of DNA binding 4, HLH proteinprovided by Xenbase
Primary source
Xenbase:XB-GENE-876360
See related
Ensembl:ENSXETG00000020825
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
idb4; id4-a; id4-b; bhlhb27
Orthologs

Genomic context

See id4 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
3
Annotation release Status Assembly Chr Location
103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) 6 NC_030682.1 (47654872..47660085, complement)
102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668239.1 (54998289..55003502, complement)

Chromosome 6 - NC_030682.1Genomic Context describing neighboring genes Neighboring gene traf2 and NCK-interacting protein kinase-like Neighboring gene fatty acid desaturase 1-like Neighboring gene uncharacterized LOC108647881 Neighboring gene uncharacterized LOC108647882

Genomic regions, transcripts, and products

Pathways from BioSystems

  • TGF-beta signaling pathway, organism-specific biosystem (from KEGG)
    TGF-beta signaling pathway, organism-specific biosystemThe transforming growth factor-beta (TGF-beta) family members, which include TGF-betas, activins and bone morphogenetic proteins (BMPs), are structurally related secreted cytokines found in species r...
  • TGF-beta signaling pathway, conserved biosystem (from KEGG)
    TGF-beta signaling pathway, conserved biosystemThe transforming growth factor-beta (TGF-beta) family members, which include TGF-betas, activins and bone morphogenetic proteins (BMPs), are structurally related secreted cytokines found in species r...

General gene information

Homology

Clone Names

  • MGC69527

General protein information

Preferred Names
DNA-binding protein inhibitor ID-4
Names
inhibitor of DNA binding 4, dominant negative helix-loop-helix protein
inhibitor of differentiation 4

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001004839.1NP_001004839.1  DNA-binding protein inhibitor ID-4

    See identical proteins and their annotated locations for NP_001004839.1

    Status: PROVISIONAL

    Source sequence(s)
    BC074645
    UniProtKB/Swiss-Prot
    Q6GL62
    Related
    ENSXETP00000049615.1, ENSXETT00000051009.1
    Conserved Domains (1) summary
    cd00083
    Location:5192
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_tropicalis_v9.1 Primary Assembly

Genomic

  1. NC_030682.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Range
    47654872..47660085 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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