Format

Send to:

Choose Destination

lcmt1 leucine carboxyl methyltransferase 1 [ Danio rerio (zebrafish) ]

Gene ID: 447907, updated on 2-Jun-2019

Summary

Official Symbol
lcmt1provided by ZNC
Official Full Name
leucine carboxyl methyltransferase 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-040912-75
See related
Ensembl:ENSDARG00000045140
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
zgc:101094
Orthologs

Genomic context

See lcmt1 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
11
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (20378376..20409750, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (20256502..20287876, complement)
103 previous assembly Zv9 (GCF_000002035.4) 12 NC_007123.5 (21730869..21762243, complement)

Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene aquaporin 8a, tandem duplicate 2 Neighboring gene aquaporin 8a, tandem duplicate 1 Neighboring gene Rho GTPase activating protein 17a Neighboring gene guanine nucleotide binding protein (G protein), alpha 13a

Genomic regions, transcripts, and products

General gene information

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
protein C-terminal leucine carboxyl O-methyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transferase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
C-terminal protein methylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
methylation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytosol IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
leucine carboxyl methyltransferase 1
NP_001004645.1
XP_005156197.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001004645.2NP_001004645.1  leucine carboxyl methyltransferase 1

    See identical proteins and their annotated locations for NP_001004645.1

    Status: PROVISIONAL

    Source sequence(s)
    BC078431
    UniProtKB/TrEMBL
    Q66L53
    Related
    ENSDARP00000072402.4, ENSDART00000077936.6
    Conserved Domains (1) summary
    pfam04072
    Location:16208
    LCM; Leucine carboxyl methyltransferase

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007123.7 Reference GRCz11 Primary Assembly

    Range
    20378376..20409750 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005156140.3XP_005156197.1  leucine carboxyl methyltransferase 1 isoform X1

    Conserved Domains (1) summary
    cl17173
    Location:4104
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394837.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    196415..226240 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center