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zgc:101731 zgc:101731 [ Danio rerio (zebrafish) ]

Gene ID: 447892, updated on 3-Oct-2019

Summary

Official Symbol
zgc:101731provided by ZNC
Official Full Name
zgc:101731provided by ZNC
Primary source
ZFIN:ZDB-GENE-040912-57
See related
Ensembl:ENSDARG00000040965
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
snap25; fj55h11; wu:fj55h11

Genomic context

See zgc:101731 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
9
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (29123029..29138266)
105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (29190152..29205390)
103 previous assembly Zv9 (GCF_000002035.4) 15 NC_007126.5 (28472112..28487360)

Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene zgc:162698 Neighboring gene calpain, small subunit 1 b Neighboring gene zgc:113149 Neighboring gene XIAP associated factor 1

Genomic regions, transcripts, and products

General gene information

Markers

Homology

Clone Names

  • MGC113859, MGC113860

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
SNAP receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
syntaxin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
exocytosis IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
synaptic vesicle fusion to presynaptic active zone membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
synaptic vesicle priming IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
vesicle fusion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
SNARE complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
synaptosomal-associated protein 25

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001025558.2NP_001020729.1  synaptosomal-associated protein 25

    See identical proteins and their annotated locations for NP_001020729.1

    Status: VALIDATED

    Source sequence(s)
    BX004776
    UniProtKB/TrEMBL
    Q4V9B6
    Related
    ENSDARP00000060029.5, ENSDART00000060030.7
    Conserved Domains (3) summary
    cd15884
    Location:147205
    SNARE_SNAP23C; C-terminal SNARE motif of SNAP23
    cd15894
    Location:1081
    SNARE_SNAP25N; N-terminal SNARE motif of SNAP25
    pfam00835
    Location:91145
    SNAP-25; SNAP-25 family

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007126.7 Reference GRCz11 Primary Assembly

    Range
    29123029..29138266
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005157731.4XP_005157788.1  synaptosomal-associated protein 25 isoform X2

    Conserved Domains (3) summary
    cd15884
    Location:145203
    SNARE_SNAP23C; C-terminal SNARE motif of SNAP23
    cd15894
    Location:1082
    SNARE_SNAP25N; N-terminal SNARE motif of SNAP25
    pfam00835
    Location:90143
    SNAP-25; SNAP-25 family
  2. XM_005157730.4XP_005157787.1  synaptosomal-associated protein 25 isoform X1

    See identical proteins and their annotated locations for XP_005157787.1

    UniProtKB/TrEMBL
    Q4V9B6
    Related
    ENSDARP00000117921.1, ENSDART00000133988.3
    Conserved Domains (3) summary
    cd15884
    Location:147205
    SNARE_SNAP23C; C-terminal SNARE motif of SNAP23
    cd15894
    Location:1081
    SNARE_SNAP25N; N-terminal SNARE motif of SNAP25
    pfam00835
    Location:91145
    SNAP-25; SNAP-25 family
  3. XM_005157732.4XP_005157789.1  synaptosomal-associated protein 25 isoform X3

    See identical proteins and their annotated locations for XP_005157789.1

    UniProtKB/TrEMBL
    Q66ID7
    Conserved Domains (2) summary
    cd15884
    Location:75133
    SNARE_SNAP23C; C-terminal SNARE motif of SNAP23
    pfam00835
    Location:2073
    SNAP-25; SNAP-25 family
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