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taf6 TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor [ Danio rerio (zebrafish) ]

Gene ID: 447818, updated on 17-Nov-2020

Summary

Official Symbol
taf6provided by ZNC
Official Full Name
TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factorprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040912-23
See related
Ensembl:ENSDARG00000102998
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:92160; wu:fb83e08; wu:fj30b02
Orthologs

Genomic context

See taf6 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
16
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (53581476..53761946)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (52934910..53115353)
103 previous assembly Zv9 (GCF_000002035.4) 5 NC_007116.5 (63685823..63769866, complement)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108190035 Neighboring gene uncharacterized LOC110439831 Neighboring gene uncharacterized LOC103911121 Neighboring gene uncharacterized LOC103911120 Neighboring gene uncharacterized LOC101882972 Neighboring gene uncharacterized LOC108190117 Neighboring gene spermidine/spermine N1-acetyltransferase family member 2b Neighboring gene N-alpha-acetyltransferase 38, NatC auxiliary subunit Neighboring gene claudin 15b

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
contributes_to RNA polymerase II general transcription initiation factor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
RNA polymerase II general transcription initiation factor activity IEA
Inferred from Electronic Annotation
more info
 
protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 
transcription coactivator activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
DNA-templated transcription, initiation IEA
Inferred from Electronic Annotation
more info
 
histone acetylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
positive regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transcription initiation from RNA polymerase II promoter IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transcription initiation from RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
SAGA complex IEA
Inferred from Electronic Annotation
more info
 
SLIK (SAGA-like) complex IEA
Inferred from Electronic Annotation
more info
 
transcription factor TFIID complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transcription factor TFIID complex IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
transcription initiation factor TFIID subunit 6

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001004557.1NP_001004557.1  transcription initiation factor TFIID subunit 6

    See identical proteins and their annotated locations for NP_001004557.1

    Status: PROVISIONAL

    Source sequence(s)
    BC081612
    UniProtKB/TrEMBL
    Q66HZ5
    Related
    ENSDARP00000134854.1, ENSDART00000161751.3
    Conserved Domains (1) summary
    cd08050
    Location:15378
    TAF6; TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    53581476..53761946
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021476094.1XP_021331769.1  transcription initiation factor TFIID subunit 6 isoform X1

    Conserved Domains (1) summary
    cd08050
    Location:15378
    TAF6; TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
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