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wdr5.S WD repeat domain 5 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 447447, updated on 11-Apr-2024

Summary

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Official Symbol
wdr5.S
Official Full Name
WD repeat domain 5 S homeolog
Primary source
Xenbase:XB-GENE-866297
Locus tag
XELAEV_18041563mg
See related
EnsemblRapid:ENSXLAG00005008835
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
swd3; wdr5; big-3; xwdr5; wdr5-a; wdr5-b
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Genomic context

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Location:
chromosome: 8S
Exon count:
14
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8S NC_054386.1 (30335681..30355459, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8S NC_030739.1 (30214330..30234077, complement)

Chromosome 8S - NC_054386.1Genomic Context describing neighboring genes Neighboring gene retinoid X receptor alpha S homeolog Neighboring gene U6atac minor spliceosomal RNA Neighboring gene bromodomain containing 3 S homeolog Neighboring gene putative uncharacterized protein BRD3OS

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC81485

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA polymerase II general transcription initiation factor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of transcription factor TFIID complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
WD repeat domain 5 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094154.1 → NP_001087623.1  WD repeat domain 5 S homeolog

    See identical proteins and their annotated locations for NP_001087623.1

    Status: PROVISIONAL

    Source sequence(s)
    BC081008
    UniProtKB/TrEMBL
    A0A974C295, Q66J98
    Related
    ENSXLAP00005025760.1, ENSXLAT00005026472.1
    Conserved Domains (2) summary
    cd00200
    Location:37 → 331
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:48 → 85
    7WD40; WD40 repeat [structural motif]

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054386.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    30335681..30355459 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018232042.2 → XP_018087531.1  WD repeat domain 5 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974C295, Q66J98
    Conserved Domains (2) summary
    cd00200
    Location:37 → 331
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:48 → 85
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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