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sf3a3 splicing factor 3a, subunit 3 [ Danio rerio (zebrafish) ]

Gene ID: 446168, updated on 17-Nov-2020

Summary

Official Symbol
sf3a3provided by ZNC
Official Full Name
splicing factor 3a, subunit 3provided by ZNC
Primary source
ZFIN:ZDB-GENE-040908-1
See related
Ensembl:ENSDARG00000100114
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
SAP61; SF3a60; wu:fi15a; wu:fi15a06; wu:fj94f01; zgc:110227
Orthologs

Genomic context

See sf3a3 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
17
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (17292667..17304994, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (17388305..17400632, complement)
103 previous assembly Zv9 (GCF_000002035.4) 19 NC_007130.5 (16724544..16737186, complement)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110438143 Neighboring gene si:ch211-30b16.2 Neighboring gene ubiquitin-conjugating enzyme E2E 1 Neighboring gene NFKB inhibitor interacting Ras-like 1

Genomic regions, transcripts, and products

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC110227

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
RNA binding IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
hematopoietic stem cell differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
mRNA splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IEA
Inferred from Electronic Annotation
more info
 
spliceosomal complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
splicing factor 3A subunit 3
Names
spliceosome associated protein 61

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001004289.1NP_001004289.1  splicing factor 3A subunit 3

    See identical proteins and their annotated locations for NP_001004289.1

    Status: PROVISIONAL

    Source sequence(s)
    AY648757
    UniProtKB/TrEMBL
    Q6DRK2
    Related
    ENSDARP00000140243.1, ENSDART00000160433.3
    Conserved Domains (5) summary
    COG5188
    Location:2501
    PRP9; Splicing factor 3a, subunit 3 [RNA processing and modification]
    pfam11931
    Location:323498
    DUF3449; Domain of unknown function (DUF3449)
    pfam12108
    Location:74100
    SF3a60_bindingd; Splicing factor SF3a60 binding domain
    pfam13297
    Location:244303
    Telomere_Sde2_2; Telomere stability C-terminal
    pfam16837
    Location:129204
    SF3A3; Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    17292667..17304994 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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