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myf6 myogenic factor 6 [ Takifugu rubripes (torafugu) ]

Gene ID: 446039, updated on 5-Mar-2024

Summary

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Gene symbol
myf6
Gene description
myogenic factor 6
See related
Ensembl:ENSTRUG00000010842
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
Orthologs
human zebrafish all
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Genomic context

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See myf6 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
3
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) 18 NC_042302.1 (4389563..4390916, complement)
101 previous assembly FUGU5 (GCF_000180615.1) 18 NC_018907.1 (3650577..3651930, complement)

Chromosome 18 - NC_042302.1Genomic Context describing neighboring genes Neighboring gene lin-7 homolog A (C. elegans) Neighboring gene myogenic factor 5 Neighboring gene ubl carboxyl-terminal hydrolase 18-like Neighboring gene G1/S-specific cyclin-D2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in muscle organ development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of myoblast differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
myogenic factor 6
Names
muscle-specific regulatory factor 4
myf-6
myogenic regulatory factor 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001032771.1 → NP_001027943.1  myogenic factor 6

    See identical proteins and their annotated locations for NP_001027943.1

    Status: PROVISIONAL

    Source sequence(s)
    AY445320
    UniProtKB/Swiss-Prot
    Q6SYV5, Q90ZL0
    UniProtKB/TrEMBL
    H2TRT7
    Related
    ENSTRUP00000027394.1, ENSTRUT00000027503.3
    Conserved Domains (2) summary
    pfam00010
    Location:97 → 148
    HLH; Helix-loop-helix DNA-binding domain
    pfam01586
    Location:2 → 96
    Basic; Myogenic Basic domain

RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NC_042302.1 Reference fTakRub1.2 Primary Assembly

    Range
    4389563..4390916 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6SYV5.1 GenPept UniProtKB/Swiss-Prot:Q6SYV5

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Miscellaneous