Format

Send to:

Choose Destination

betaTrCP beta-transducin repeat-containing homologue protein [ Ciona intestinalis (vase tunicate) ]

Gene ID: 445628, updated on 28-Oct-2019

Summary

Gene symbol
betaTrCP
Gene description
beta-transducin repeat-containing homologue protein
See related
Ensembl:ENSCING00000009295
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ciona intestinalis
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona

Genomic context

See betaTrCP in Genome Data Viewer
Location:
chromosome: 5
Exon count:
15
Annotation release Status Assembly Chr Location
104 current KH (GCF_000224145.3) 5 NC_020170.2 (2913318..2927252)

Chromosome 5 - NC_020170.2Genomic Context describing neighboring genes Neighboring gene major vault protein Neighboring gene alpha-adducin Neighboring gene Fanconi anemia group I protein-like Neighboring gene prefoldin subunit 3 Neighboring gene 39S ribosomal protein L41-B, mitochondrial

Genomic regions, transcripts, and products

Genomic Sequence:
NC_020170.2 Chromosome 5 Reference KH Primary Assembly

Pathways from BioSystems

  • SCF-BTRC complex, organism-specific biosystem (from KEGG)
    SCF-BTRC complex, organism-specific biosystemStructural complex; Genetic information processing; Ubiquitin system
  • SCF-BTRC complex, conserved biosystem (from KEGG)
    SCF-BTRC complex, conserved biosystemStructural complex; Genetic information processing; Ubiquitin system
  • Ubiquitin mediated proteolysis, organism-specific biosystem (from KEGG)
    Ubiquitin mediated proteolysis, organism-specific biosystemProtein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to protein...
  • Ubiquitin mediated proteolysis, conserved biosystem (from KEGG)
    Ubiquitin mediated proteolysis, conserved biosystemProtein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to protein...
  • Wnt signaling pathway, organism-specific biosystem (from KEGG)
    Wnt signaling pathway, organism-specific biosystemWnt proteins are secreted morphogens that are required for basic developmental processes, such as cell-fate specification, progenitor-cell proliferation and the control of asymmetric cell division, i...
  • Wnt signaling pathway, conserved biosystem (from KEGG)
    Wnt signaling pathway, conserved biosystemWnt proteins are secreted morphogens that are required for basic developmental processes, such as cell-fate specification, progenitor-cell proliferation and the control of asymmetric cell division, i...

General protein information

Preferred Names
beta-transducin repeat-containing homologue protein
Names
Ci-betaTrCP

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001032454.1NP_001027626.1  beta-transducin repeat-containing homologue protein

    See identical proteins and their annotated locations for NP_001027626.1

    Status: PROVISIONAL

    Source sequence(s)
    AB076893
    UniProtKB/TrEMBL
    Q86SD3
    Related
    ENSCINP00000018885, ENSCINT00000018885
    Conserved Domains (5) summary
    COG2319
    Location:306602
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:319597
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam12125
    Location:157195
    Beta-TrCP_D; D domain of beta-TrCP
    pfam12937
    Location:199246
    F-box-like; F-box-like
    sd00039
    Location:322357
    7WD40; WD40 repeat [structural motif]

RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KH Primary Assembly

Genomic

  1. NC_020170.2 Reference KH Primary Assembly

    Range
    2913318..2927252
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center