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FAM120A2P family with sequence similarity 120A2, pseudogene [ Homo sapiens (human) ]

Gene ID: 445577, updated on 1-Jun-2022

Summary

Official Symbol
FAM120A2Pprovided by HGNC
Official Full Name
family with sequence similarity 120A2, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:31116
See related
AllianceGenome:HGNC:31116
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C9orf129; bA165J3.3
Summary
Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in colon (RPKM 10.9), brain (RPKM 8.0) and 25 other tissues See more
Orthologs
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Genomic context

See FAM120A2P in Genome Data Viewer
Location:
9q22.31
Exon count:
3
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (93329488..93346303, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (105496883..105513702, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (96091770..96108585, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902213 Neighboring gene WNK lysine deficient protein kinase 2 Neighboring gene uncharacterized LOC124902214 Neighboring gene RNA, U6 small nuclear 829, pseudogene Neighboring gene uncharacterized LOC107987097

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Homology

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_166069.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL583839

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    93329488..93346303 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    105496883..105513702 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001098808.1: Suppressed sequence

    Description
    NM_001098808.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.
  2. NM_001368813.1: Suppressed sequence

    Description
    NM_001368813.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.