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HAPLN1 hyaluronan and proteoglycan link protein 1 [ Sus scrofa (pig) ]

Gene ID: 445513, updated on 2-Oct-2018

Summary

Gene symbol
HAPLN1
Gene description
hyaluronan and proteoglycan link protein 1
See related
Ensembl:ENSSSCG00000014137
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus
Expression
Biased expression in lung (RPKM 2.5), mixtures (RPKM 0.9) and 4 other tissues See more
Orthologs

Genomic context

See HAPLN1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 2 NC_010444.4 (91857495..91935485, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 2 NC_010444.3 (93941323..94019486, complement)

Chromosome 2 - NC_010444.4Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S15 pseudogene Neighboring gene versican Neighboring gene uncharacterized LOC102165705 Neighboring gene EGF like repeats and discoidin domains 3 Neighboring gene uncharacterized LOC110259771

Genomic regions, transcripts, and products

General gene information

Markers

Homology

Gene Ontology Provided by GO

Function Evidence Code Pubs
hyaluronic acid binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
cell adhesion IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
hyaluronan and proteoglycan link protein 1
Names
cartilage-link protein
cartilage-linking protein 1
link protein precursor (AA -15 to 339)
proteoglycan link protein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001004028.1NP_001004028.1  hyaluronan and proteoglycan link protein 1 precursor

    See identical proteins and their annotated locations for NP_001004028.1

    Status: PROVISIONAL

    Source sequence(s)
    Y00165
    UniProtKB/Swiss-Prot
    P10859
    Conserved Domains (4) summary
    cd05877
    Location:53160
    Ig_LP_like; Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)
    smart00410
    Location:54154
    IG_like; Immunoglobulin like
    cd03518
    Location:159253
    Link_domain_HAPLN_module_1; Link_domain_HAPLN_module_1; this link domain is found in the first link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a HA-binding ...
    cd03519
    Location:260350
    Link_domain_HAPLN_module_2; Link_domain_HAPLN_module_2; this link domain is found in the second link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a ...

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010444.4 Reference Sscrofa11.1 Primary Assembly

    Range
    91857495..91935485 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005661538.3XP_005661595.1  hyaluronan and proteoglycan link protein 1 isoform X1

    See identical proteins and their annotated locations for XP_005661595.1

    UniProtKB/TrEMBL
    F1REZ1
    Related
    ENSSSCP00000043523.1, ENSSSCT00000060841.1
    Conserved Domains (4) summary
    cd05877
    Location:53160
    Ig_LP_like; Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)
    smart00410
    Location:54154
    IG_like; Immunoglobulin like
    cd03518
    Location:159253
    Link_domain_HAPLN_module_1; Link_domain_HAPLN_module_1; this link domain is found in the first link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a HA-binding ...
    cd03519
    Location:260350
    Link_domain_HAPLN_module_2; Link_domain_HAPLN_module_2; this link domain is found in the second link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a ...
  2. XM_005661539.3XP_005661596.1  hyaluronan and proteoglycan link protein 1 isoform X1

    See identical proteins and their annotated locations for XP_005661596.1

    UniProtKB/TrEMBL
    F1REZ1
    Related
    ENSSSCP00000015032.2, ENSSSCT00000015441.3
    Conserved Domains (4) summary
    cd05877
    Location:53160
    Ig_LP_like; Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)
    smart00410
    Location:54154
    IG_like; Immunoglobulin like
    cd03518
    Location:159253
    Link_domain_HAPLN_module_1; Link_domain_HAPLN_module_1; this link domain is found in the first link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a HA-binding ...
    cd03519
    Location:260350
    Link_domain_HAPLN_module_2; Link_domain_HAPLN_module_2; this link domain is found in the second link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a ...
  3. XM_013994962.2XP_013850416.1  hyaluronan and proteoglycan link protein 1 isoform X1

    UniProtKB/TrEMBL
    F1REZ1
    Conserved Domains (4) summary
    cd05877
    Location:53160
    Ig_LP_like; Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)
    smart00410
    Location:54154
    IG_like; Immunoglobulin like
    cd03518
    Location:159253
    Link_domain_HAPLN_module_1; Link_domain_HAPLN_module_1; this link domain is found in the first link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a HA-binding ...
    cd03519
    Location:260350
    Link_domain_HAPLN_module_2; Link_domain_HAPLN_module_2; this link domain is found in the second link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a ...
  4. XM_013994961.2XP_013850415.1  hyaluronan and proteoglycan link protein 1 isoform X1

    UniProtKB/TrEMBL
    F1REZ1
    Conserved Domains (4) summary
    cd05877
    Location:53160
    Ig_LP_like; Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)
    smart00410
    Location:54154
    IG_like; Immunoglobulin like
    cd03518
    Location:159253
    Link_domain_HAPLN_module_1; Link_domain_HAPLN_module_1; this link domain is found in the first link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a HA-binding ...
    cd03519
    Location:260350
    Link_domain_HAPLN_module_2; Link_domain_HAPLN_module_2; this link domain is found in the second link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a ...
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