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nfil3 nuclear factor, interleukin 3 regulated [ Danio rerio (zebrafish) ]

Gene ID: 445509, updated on 3-Oct-2019

Summary

Official Symbol
nfil3provided by ZNC
Official Full Name
nuclear factor, interleukin 3 regulatedprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040822-28
See related
Ensembl:ENSDARG00000042977
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
E4BP4-1; zgc:100867
Orthologs

Genomic context

See nfil3 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
2
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (5414243..5419256)
105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (5413939..5418952)
103 previous assembly Zv9 (GCF_000002035.4) 10 NC_007121.5 (5417645..5422658)

Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103911709 Neighboring gene uncharacterized LOC103911708 Neighboring gene receptor tyrosine kinase-like orphan receptor 2 Neighboring gene AU RNA binding protein/enoyl-CoA hydratase Neighboring gene spleen tyrosine kinase Neighboring gene DIRAS family GTPase 2

Genomic regions, transcripts, and products

General gene information

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
circadian rhythm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
circadian rhythm IEA
Inferred from Electronic Annotation
more info
 
heart development IMP
Inferred from Mutant Phenotype
more info
PubMed 
immune response IEA
Inferred from Electronic Annotation
more info
 
myeloid cell development IMP
Inferred from Mutant Phenotype
more info
PubMed 
negative regulation of transcription, DNA-templated ISS
Inferred from Sequence or Structural Similarity
more info
 
regulation of transcription, DNA-templated IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
rhythmic process IEA
Inferred from Electronic Annotation
more info
 
transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
nuclear factor interleukin-3-regulated protein
Names
E4 binding protein 4-1
E4BP4
ze4bp4-1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001004120.2NP_001004120.1  nuclear factor interleukin-3-regulated protein

    See identical proteins and their annotated locations for NP_001004120.1

    Status: PROVISIONAL

    Source sequence(s)
    BC080210
    UniProtKB/Swiss-Prot
    Q68EL6
    UniProtKB/TrEMBL
    E2E3F5
    Related
    ENSDARP00000119920.1, ENSDART00000138821.2
    Conserved Domains (2) summary
    cd14694
    Location:62121
    bZIP_NFIL3; Basic leucine zipper (bZIP) domain of Nuclear factor interleukin-3-regulated protein (NFIL3): a DNA-binding and dimerization domain
    pfam06529
    Location:120452
    Vert_IL3-reg_TF; Vertebrate interleukin-3 regulated transcription factor

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007121.7 Reference GRCz11 Primary Assembly

    Range
    5414243..5419256
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394764.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    227269..232282
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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