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ptn.L pleiotrophin L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 444715, updated on 27-Jan-2018

Summary

Official Symbol
ptn.L
Official Full Name
pleiotrophin L homeolog
Primary source
Xenbase:XB-GENE-865472
Locus tag
XELAEV_18002469mg
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
ptn; PTN-A; X-PTF; ptn.S
Annotation information
Annotation category: partial on reference assembly

Genomic context

See ptn.L in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016694822.1 (524417..562779)

NW_016694822.1Genomic Context describing neighboring genes Neighboring gene cAMP responsive element binding protein 3-like 2 L homeolog Neighboring gene diacylglycerol kinase iota-like Neighboring gene uncharacterized LOC108704357 Neighboring gene cholinergic receptor, muscarinic 2 L homeolog Neighboring gene myotrophin-like

Genomic regions, transcripts, and products

Genomic Sequence:
NW_016694822.1 Unplaced Scaffold Reference Xenopus_laevis_v2 Primary Assembly

General protein information

Preferred Names
pleiotrophin-A
Names
PTF-beta-1
X-PTF-beta1
pleiotrophic factor-beta-1
pleiotrophin S homeolog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001092817.1NP_001086286.1  pleiotrophin-A precursor

    See identical proteins and their annotated locations for NP_001086286.1

    Status: PROVISIONAL

    Source sequence(s)
    BC074426
    UniProtKB/Swiss-Prot
    P48532
    Conserved Domains (1) summary
    cl02505
    Location:41125
    PTN_MK_N; PTN/MK heparin-binding protein family, N-terminal domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v2 Primary Assembly

Genomic

  1. NW_016694822.1 Reference Xenopus_laevis_v2 Primary Assembly

    Range
    524417..562779
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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