U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

spring1.S SREBF pathway regulator in golgi 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 444272, updated on 6-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
spring1.S
Official Full Name
SREBF pathway regulator in golgi 1 S homeolog
Primary source
Xenbase:XB-GENE-5957003
Locus tag
XELAEV_18010685mg
See related
EnsemblRapid:ENSXLAG00005007368
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
spring; spring1; c12orf49; c12orf49.S
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 1S
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1S NC_054372.1 (152838922..152843566, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1S NC_030725.1 (137042369..137047013, complement)

Chromosome 1S - NC_054372.1Genomic Context describing neighboring genes Neighboring gene WSC domain containing 2 S homeolog Neighboring gene chemerin chemokine-like receptor 1 S homeolog Neighboring gene ring finger protein, transmembrane 2 S homeolog Neighboring gene tescalcin S homeolog

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Clone Names

  • MGC80896

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within positive regulation of SREBP signaling pathway IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within positive regulation of SREBP signaling pathway ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi membrane ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
SREBP regulating gene protein
Names
UPF0454 protein C12orf49 homolog

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001092376.1 → NP_001085845.1  SREBP regulating gene protein

    See identical proteins and their annotated locations for NP_001085845.1

    Status: PROVISIONAL

    Source sequence(s)
    BC073420
    UniProtKB/Swiss-Prot
    Q6GNT2
    UniProtKB/TrEMBL
    A0A974DUM3
    Related
    ENSXLAP00005021035.1, ENSXLAT00005021668.1
    Conserved Domains (1) summary
    pfam10218
    Location:72 → 195
    DUF2054; Uncharacterized conserved protein (DUF2054)

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054372.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    152838922..152843566 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6GNT2.1 GenPept UniProtKB/Swiss-Prot:Q6GNT2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.