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PRY2 PTPN13 like Y-linked 2 [ Homo sapiens (human) ]

Gene ID: 442862, updated on 23-Nov-2021

Summary

Official Symbol
PRY2provided by HGNC
Official Full Name
PTPN13 like Y-linked 2provided by HGNC
Primary source
HGNC:HGNC:21504
See related
Ensembl:ENSG00000169807 MIM:400041
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PTPN13LY2
Summary
This gene is located in the nonrecombining portion of the Y chromosome, and expressed specifically in testis. It encodes a protein which has a low degree of similarity to protein tyrosine phosphatase, non-receptor type 13. Two nearly identical copies of this gene exist within a palindromic region. This record represents the more centromeric copy. [provided by RefSeq, Jul 2008]
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Genomic context

See PRY2 in Genome Data Viewer
Location:
Yq11.223
Exon count:
5
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) Y NC_000024.10 (22071756..22096007, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) Y NC_000024.9 (24217903..24242154, complement)

Chromosome Y - NC_000024.10Genomic Context describing neighboring genes Neighboring gene chromodomain Y-linked 12 pseudogene Neighboring gene elongin C pseudogene 15 Neighboring gene uncharacterized LOC102725532 Neighboring gene testis-specific transcript, Y-linked 6B Neighboring gene RNA binding motif protein Y-linked family 1 member F

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
PTPN13-like protein, Y-linked
Names
PTPN13-like, Y-linked, centromeric
testis-specific PTP-BL-related Y protein
testis-specific PTP-BL-related protein on Y

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_032918.1 RefSeqGene

    Range
    5001..29252
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
  2. NG_004755.2 

    Range
    260870..285121 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001002758.1NP_001002758.1  PTPN13-like protein, Y-linked

    See identical proteins and their annotated locations for NP_001002758.1

    Status: REVIEWED

    Source sequence(s)
    AC007359
    Consensus CDS
    CCDS35482.1
    UniProtKB/Swiss-Prot
    O14603
    Related
    ENSP00000303300.1, ENST00000303804.5

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000024.10 Reference GRCh38.p13 Primary Assembly

    Range
    22071756..22096007 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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